Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LDB3O75112 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
LDB3O75112 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.27■□□□□ 0.36
LDB3O75112 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC17.27■□□□□ 0.36
LDB3O75112 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC17.27■□□□□ 0.36
LDB3O75112 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LDB3O75112 NEFHP1-201ENST00000412845 2629 ntBASIC17.27■□□□□ 0.36
LDB3O75112 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LDB3O75112 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
LDB3O75112 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
LDB3O75112 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC17.27■□□□□ 0.36
LDB3O75112 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LDB3O75112 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
LDB3O75112 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC17.27■□□□□ 0.36
LDB3O75112 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC17.27■□□□□ 0.36
LDB3O75112 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC17.27■□□□□ 0.36
LDB3O75112 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LDB3O75112 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC17.27■□□□□ 0.36
LDB3O75112 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LDB3O75112 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
LDB3O75112 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
LDB3O75112 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.27■□□□□ 0.35
LDB3O75112 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
LDB3O75112 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
LDB3O75112 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
LDB3O75112 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
LDB3O75112 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
LDB3O75112 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.35
LDB3O75112 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC17.27■□□□□ 0.35
LDB3O75112 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
LDB3O75112 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC17.27■□□□□ 0.35
LDB3O75112 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
LDB3O75112 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC17.27■□□□□ 0.35
LDB3O75112 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LDB3O75112 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LDB3O75112 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LDB3O75112 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LDB3O75112 PBK-203ENST00000522944 1499 ntTSL 2 BASIC17.26■□□□□ 0.35
LDB3O75112 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LDB3O75112 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
LDB3O75112 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LDB3O75112 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC17.26■□□□□ 0.35
LDB3O75112 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
LDB3O75112 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC17.26■□□□□ 0.35
LDB3O75112 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LDB3O75112 AC112907.2-201ENST00000448639 330 ntBASIC17.26■□□□□ 0.35
LDB3O75112 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LDB3O75112 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
LDB3O75112 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC17.26■□□□□ 0.35
LDB3O75112 AC079602.3-201ENST00000623931 403 ntBASIC17.26■□□□□ 0.35
LDB3O75112 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC17.26■□□□□ 0.35
LDB3O75112 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC17.26■□□□□ 0.35
LDB3O75112 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LDB3O75112 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LDB3O75112 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
LDB3O75112 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LDB3O75112 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.26■□□□□ 0.35
LDB3O75112 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LDB3O75112 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
LDB3O75112 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LDB3O75112 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.26■□□□□ 0.35
LDB3O75112 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LDB3O75112 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC17.26■□□□□ 0.35
LDB3O75112 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.25■□□□□ 0.35
LDB3O75112 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC17.25■□□□□ 0.35
LDB3O75112 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC17.25■□□□□ 0.35
LDB3O75112 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
LDB3O75112 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LDB3O75112 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
LDB3O75112 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LDB3O75112 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC17.25■□□□□ 0.35
LDB3O75112 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
LDB3O75112 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LDB3O75112 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LDB3O75112 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
LDB3O75112 FAM8A6P-201ENST00000407496 1135 ntBASIC17.25■□□□□ 0.35
LDB3O75112 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LDB3O75112 AC092597.1-201ENST00000487352 616 ntBASIC17.25■□□□□ 0.35
LDB3O75112 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LDB3O75112 LTBR-211ENST00000543190 785 ntTSL 3 BASIC17.25■□□□□ 0.35
LDB3O75112 LINC01238-205ENST00000567549 1107 ntBASIC17.25■□□□□ 0.35
LDB3O75112 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LDB3O75112 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LDB3O75112 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
LDB3O75112 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LDB3O75112 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LDB3O75112 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LDB3O75112 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LDB3O75112 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LDB3O75112 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LDB3O75112 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LDB3O75112 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.24■□□□□ 0.35
LDB3O75112 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LDB3O75112 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.24■□□□□ 0.35
LDB3O75112 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LDB3O75112 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LDB3O75112 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
LDB3O75112 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
LDB3O75112 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
LDB3O75112 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms