Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC24.95■■□□□ 1.58
MSH5O43196 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
MSH5O43196 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC24.95■■□□□ 1.58
MSH5O43196 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC24.95■■□□□ 1.58
MSH5O43196 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
MSH5O43196 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC24.95■■□□□ 1.58
MSH5O43196 KRT18P38-201ENST00000449496 1282 ntBASIC24.95■■□□□ 1.58
MSH5O43196 TSPY17P-201ENST00000450329 467 ntBASIC24.95■■□□□ 1.58
MSH5O43196 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
MSH5O43196 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC24.95■■□□□ 1.58
MSH5O43196 PTK2-216ENST00000519881 863 ntTSL 3 BASIC24.95■■□□□ 1.58
MSH5O43196 AL512604.3-201ENST00000569583 964 ntBASIC24.95■■□□□ 1.58
MSH5O43196 AC110760.3-201ENST00000598794 467 ntBASIC24.95■■□□□ 1.58
MSH5O43196 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC24.95■■□□□ 1.58
MSH5O43196 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC24.95■■□□□ 1.58
MSH5O43196 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC24.95■■□□□ 1.58
MSH5O43196 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC24.95■■□□□ 1.58
MSH5O43196 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
MSH5O43196 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC24.95■■□□□ 1.58
MSH5O43196 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC24.95■■□□□ 1.58
MSH5O43196 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
MSH5O43196 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC24.95■■□□□ 1.58
MSH5O43196 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
MSH5O43196 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
MSH5O43196 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
MSH5O43196 TFP1-202ENST00000475455 1573 ntBASIC24.94■■□□□ 1.58
MSH5O43196 AC116351.2-201ENST00000606540 1585 ntBASIC24.94■■□□□ 1.58
MSH5O43196 ZNF92P1Y-201ENST00000415010 1191 ntBASIC24.94■■□□□ 1.58
MSH5O43196 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC24.94■■□□□ 1.58
MSH5O43196 AL137078.1-201ENST00000446280 404 ntTSL 2 BASIC24.94■■□□□ 1.58
MSH5O43196 AC084824.4-201ENST00000620106 731 ntBASIC24.94■■□□□ 1.58
MSH5O43196 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC24.94■■□□□ 1.58
MSH5O43196 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC24.94■■□□□ 1.58
MSH5O43196 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC24.94■■□□□ 1.58
MSH5O43196 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC24.94■■□□□ 1.58
MSH5O43196 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
MSH5O43196 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC24.94■■□□□ 1.58
MSH5O43196 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC24.94■■□□□ 1.58
MSH5O43196 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC24.94■■□□□ 1.58
MSH5O43196 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
MSH5O43196 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC24.93■■□□□ 1.58
MSH5O43196 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC24.93■■□□□ 1.58
MSH5O43196 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC24.93■■□□□ 1.58
MSH5O43196 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC24.93■■□□□ 1.58
MSH5O43196 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC24.93■■□□□ 1.58
MSH5O43196 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
MSH5O43196 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
MSH5O43196 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
MSH5O43196 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC24.93■■□□□ 1.58
MSH5O43196 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
MSH5O43196 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
MSH5O43196 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
MSH5O43196 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC24.93■■□□□ 1.58
MSH5O43196 PPIL3-202ENST00000392283 1194 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
MSH5O43196 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC24.93■■□□□ 1.58
MSH5O43196 FXN-203ENST00000396366 922 ntTSL 2 BASIC24.93■■□□□ 1.58
MSH5O43196 AC246785.2-201ENST00000432512 513 ntBASIC24.93■■□□□ 1.58
MSH5O43196 GXYLT1P6-201ENST00000456472 1187 ntBASIC24.93■■□□□ 1.58
MSH5O43196 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC24.93■■□□□ 1.58
MSH5O43196 PRSS44-201ENST00000515154 1146 ntBASIC24.93■■□□□ 1.58
MSH5O43196 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC24.93■■□□□ 1.58
MSH5O43196 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC24.93■■□□□ 1.58
MSH5O43196 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC24.93■■□□□ 1.58
MSH5O43196 AC012213.3-201ENST00000577199 777 ntBASIC24.93■■□□□ 1.58
MSH5O43196 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC24.93■■□□□ 1.58
MSH5O43196 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
MSH5O43196 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC24.93■■□□□ 1.58
MSH5O43196 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC24.93■■□□□ 1.58
MSH5O43196 GOLGA6L3-201ENST00000507199 1679 ntBASIC24.93■■□□□ 1.58
MSH5O43196 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC24.93■■□□□ 1.58
MSH5O43196 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
MSH5O43196 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC24.92■■□□□ 1.58
MSH5O43196 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC24.92■■□□□ 1.58
MSH5O43196 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC24.92■■□□□ 1.58
MSH5O43196 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
MSH5O43196 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
MSH5O43196 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC24.92■■□□□ 1.58
MSH5O43196 HLA-DPB2-205ENST00000435074 1188 ntBASIC24.92■■□□□ 1.58
MSH5O43196 AC104123.1-203ENST00000513158 575 ntTSL 3 BASIC24.92■■□□□ 1.58
MSH5O43196 AC022973.3-201ENST00000521014 467 ntTSL 5 BASIC24.92■■□□□ 1.58
MSH5O43196 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC24.92■■□□□ 1.58
MSH5O43196 ETFA-216ENST00000560726 942 ntTSL 3 BASIC24.92■■□□□ 1.58
MSH5O43196 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC24.92■■□□□ 1.58
MSH5O43196 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC24.92■■□□□ 1.58
MSH5O43196 LINC01198-206ENST00000595532 1125 ntBASIC24.92■■□□□ 1.58
MSH5O43196 HLA-A-209ENST00000638375 975 ntBASIC24.92■■□□□ 1.58
MSH5O43196 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
MSH5O43196 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC24.92■■□□□ 1.58
MSH5O43196 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
MSH5O43196 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
MSH5O43196 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
MSH5O43196 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
MSH5O43196 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
MSH5O43196 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC24.91■■□□□ 1.58
MSH5O43196 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC24.91■■□□□ 1.58
MSH5O43196 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC24.91■■□□□ 1.58
MSH5O43196 AC018553.1-201ENST00000616682 1458 ntBASIC24.91■■□□□ 1.58
MSH5O43196 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC24.91■■□□□ 1.58
MSH5O43196 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC24.91■■□□□ 1.58
MSH5O43196 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC24.91■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms