Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CUEDC1Q9NWM3 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC17.78■□□□□ 0.44
CUEDC1Q9NWM3 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CUEDC1Q9NWM3 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
CUEDC1Q9NWM3 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CUEDC1Q9NWM3 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CUEDC1Q9NWM3 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CUEDC1Q9NWM3 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CUEDC1Q9NWM3 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CUEDC1Q9NWM3 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CUEDC1Q9NWM3 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CUEDC1Q9NWM3 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CUEDC1Q9NWM3 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC17.77■□□□□ 0.44
CUEDC1Q9NWM3 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CUEDC1Q9NWM3 AL163051.1-201ENST00000569214 1512 ntBASIC17.77■□□□□ 0.44
CUEDC1Q9NWM3 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CUEDC1Q9NWM3 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CUEDC1Q9NWM3 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CUEDC1Q9NWM3 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
CUEDC1Q9NWM3 AC073592.3-201ENST00000625118 1834 ntBASIC17.77■□□□□ 0.44
CUEDC1Q9NWM3 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
CUEDC1Q9NWM3 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
CUEDC1Q9NWM3 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC17.77■□□□□ 0.44
CUEDC1Q9NWM3 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
CUEDC1Q9NWM3 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
CUEDC1Q9NWM3 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
CUEDC1Q9NWM3 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC17.77■□□□□ 0.44
CUEDC1Q9NWM3 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CUEDC1Q9NWM3 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CUEDC1Q9NWM3 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.77■□□□□ 0.44
CUEDC1Q9NWM3 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CUEDC1Q9NWM3 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CUEDC1Q9NWM3 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CUEDC1Q9NWM3 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC17.77■□□□□ 0.44
CUEDC1Q9NWM3 ISCU-203ENST00000431221 799 ntTSL 2 BASIC17.77■□□□□ 0.44
CUEDC1Q9NWM3 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC17.77■□□□□ 0.44
CUEDC1Q9NWM3 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC17.77■□□□□ 0.44
CUEDC1Q9NWM3 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CUEDC1Q9NWM3 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CUEDC1Q9NWM3 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC17.77■□□□□ 0.44
CUEDC1Q9NWM3 AL157888.1-201ENST00000631930 593 ntBASIC17.77■□□□□ 0.44
CUEDC1Q9NWM3 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
CUEDC1Q9NWM3 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CUEDC1Q9NWM3 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CUEDC1Q9NWM3 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CUEDC1Q9NWM3 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.77■□□□□ 0.44
CUEDC1Q9NWM3 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.77■□□□□ 0.44
CUEDC1Q9NWM3 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CUEDC1Q9NWM3 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CUEDC1Q9NWM3 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
CUEDC1Q9NWM3 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CUEDC1Q9NWM3 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.77■□□□□ 0.43
CUEDC1Q9NWM3 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CUEDC1Q9NWM3 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
CUEDC1Q9NWM3 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CUEDC1Q9NWM3 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC17.76■□□□□ 0.43
CUEDC1Q9NWM3 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.76■□□□□ 0.43
CUEDC1Q9NWM3 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC17.76■□□□□ 0.43
CUEDC1Q9NWM3 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CUEDC1Q9NWM3 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CUEDC1Q9NWM3 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CUEDC1Q9NWM3 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CUEDC1Q9NWM3 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC17.76■□□□□ 0.43
CUEDC1Q9NWM3 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CUEDC1Q9NWM3 AC026396.1-201ENST00000419388 421 ntBASIC17.76■□□□□ 0.43
CUEDC1Q9NWM3 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CUEDC1Q9NWM3 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
CUEDC1Q9NWM3 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC17.76■□□□□ 0.43
CUEDC1Q9NWM3 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC17.76■□□□□ 0.43
CUEDC1Q9NWM3 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC17.76■□□□□ 0.43
CUEDC1Q9NWM3 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
CUEDC1Q9NWM3 AP000550.4-202ENST00000639755 178 ntBASIC17.76■□□□□ 0.43
CUEDC1Q9NWM3 AL031432.5-201ENST00000641059 760 ntBASIC17.76■□□□□ 0.43
CUEDC1Q9NWM3 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CUEDC1Q9NWM3 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
CUEDC1Q9NWM3 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CUEDC1Q9NWM3 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC17.76■□□□□ 0.43
CUEDC1Q9NWM3 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CUEDC1Q9NWM3 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CUEDC1Q9NWM3 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CUEDC1Q9NWM3 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
CUEDC1Q9NWM3 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CUEDC1Q9NWM3 RNF152P1-201ENST00000397754 604 ntBASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms