Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM39Q9HCM9 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM39Q9HCM9 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM39Q9HCM9 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.21■□□□□ 0.51
TRIM39Q9HCM9 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM39Q9HCM9 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM39Q9HCM9 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM39Q9HCM9 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
TRIM39Q9HCM9 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM39Q9HCM9 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
TRIM39Q9HCM9 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
TRIM39Q9HCM9 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM39Q9HCM9 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM39Q9HCM9 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM39Q9HCM9 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
TRIM39Q9HCM9 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
TRIM39Q9HCM9 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
TRIM39Q9HCM9 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM39Q9HCM9 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM39Q9HCM9 RNF146-204ENST00000476956 884 ntTSL 2 BASIC18.21■□□□□ 0.51
TRIM39Q9HCM9 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC18.21■□□□□ 0.51
TRIM39Q9HCM9 AL136038.4-201ENST00000603606 1261 ntBASIC18.21■□□□□ 0.51
TRIM39Q9HCM9 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC18.21■□□□□ 0.51
TRIM39Q9HCM9 AC083849.1-201ENST00000615227 514 ntBASIC18.21■□□□□ 0.51
TRIM39Q9HCM9 AL391807.1-203ENST00000604392 2365 ntBASIC18.21■□□□□ 0.51
TRIM39Q9HCM9 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM39Q9HCM9 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM39Q9HCM9 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC18.21■□□□□ 0.51
TRIM39Q9HCM9 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.21■□□□□ 0.51
TRIM39Q9HCM9 AC090340.1-201ENST00000620778 4980 ntBASIC18.21■□□□□ 0.51
TRIM39Q9HCM9 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM39Q9HCM9 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM39Q9HCM9 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM39Q9HCM9 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
TRIM39Q9HCM9 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM39Q9HCM9 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM39Q9HCM9 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM39Q9HCM9 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM39Q9HCM9 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM39Q9HCM9 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM39Q9HCM9 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM39Q9HCM9 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM39Q9HCM9 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC18.2■□□□□ 0.5
TRIM39Q9HCM9 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM39Q9HCM9 MIR149-201ENST00000384879 89 ntBASIC18.2■□□□□ 0.5
TRIM39Q9HCM9 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM39Q9HCM9 HLA-F-220ENST00000434407 884 ntBASIC18.2■□□□□ 0.5
TRIM39Q9HCM9 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC18.2■□□□□ 0.5
TRIM39Q9HCM9 REEP1-209ENST00000541910 969 ntTSL 2 BASIC18.2■□□□□ 0.5
TRIM39Q9HCM9 AL136038.3-201ENST00000561909 1096 ntBASIC18.2■□□□□ 0.5
TRIM39Q9HCM9 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC18.2■□□□□ 0.5
TRIM39Q9HCM9 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.2■□□□□ 0.5
TRIM39Q9HCM9 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM39Q9HCM9 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM39Q9HCM9 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM39Q9HCM9 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM39Q9HCM9 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM39Q9HCM9 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM39Q9HCM9 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM39Q9HCM9 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM39Q9HCM9 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM39Q9HCM9 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM39Q9HCM9 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM39Q9HCM9 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
TRIM39Q9HCM9 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC18.2■□□□□ 0.5
TRIM39Q9HCM9 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM39Q9HCM9 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRIM39Q9HCM9 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC18.19■□□□□ 0.5
TRIM39Q9HCM9 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRIM39Q9HCM9 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TRIM39Q9HCM9 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRIM39Q9HCM9 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRIM39Q9HCM9 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRIM39Q9HCM9 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRIM39Q9HCM9 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRIM39Q9HCM9 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TRIM39Q9HCM9 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
TRIM39Q9HCM9 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TRIM39Q9HCM9 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TRIM39Q9HCM9 ISCU-203ENST00000431221 799 ntTSL 2 BASIC18.19■□□□□ 0.5
TRIM39Q9HCM9 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC18.19■□□□□ 0.5
TRIM39Q9HCM9 FAM86EP-206ENST00000510506 987 ntBASIC18.19■□□□□ 0.5
TRIM39Q9HCM9 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC18.19■□□□□ 0.5
TRIM39Q9HCM9 USF2-205ENST00000594064 1179 ntTSL 2 BASIC18.19■□□□□ 0.5
TRIM39Q9HCM9 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRIM39Q9HCM9 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC18.19■□□□□ 0.5
TRIM39Q9HCM9 PBK-203ENST00000522944 1499 ntTSL 2 BASIC18.19■□□□□ 0.5
TRIM39Q9HCM9 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC18.19■□□□□ 0.5
TRIM39Q9HCM9 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRIM39Q9HCM9 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
TRIM39Q9HCM9 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
TRIM39Q9HCM9 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
TRIM39Q9HCM9 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM39Q9HCM9 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM39Q9HCM9 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM39Q9HCM9 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM39Q9HCM9 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM39Q9HCM9 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.18■□□□□ 0.5
TRIM39Q9HCM9 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM39Q9HCM9 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms