Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC17.33■□□□□ 0.36
PTCHD1Q96NR3 CLN6-204ENST00000564752 900 ntTSL 3 BASIC17.33■□□□□ 0.36
PTCHD1Q96NR3 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.36
PTCHD1Q96NR3 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PTCHD1Q96NR3 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
PTCHD1Q96NR3 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.36
PTCHD1Q96NR3 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
PTCHD1Q96NR3 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PTCHD1Q96NR3 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC17.33■□□□□ 0.36
PTCHD1Q96NR3 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PTCHD1Q96NR3 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC17.33■□□□□ 0.36
PTCHD1Q96NR3 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
PTCHD1Q96NR3 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
PTCHD1Q96NR3 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
PTCHD1Q96NR3 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PTCHD1Q96NR3 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
PTCHD1Q96NR3 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PTCHD1Q96NR3 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PTCHD1Q96NR3 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
PTCHD1Q96NR3 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PTCHD1Q96NR3 AL163051.1-201ENST00000569214 1512 ntBASIC17.32■□□□□ 0.36
PTCHD1Q96NR3 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTCHD1Q96NR3 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
PTCHD1Q96NR3 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTCHD1Q96NR3 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC17.32■□□□□ 0.36
PTCHD1Q96NR3 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
PTCHD1Q96NR3 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTCHD1Q96NR3 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PTCHD1Q96NR3 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC17.32■□□□□ 0.36
PTCHD1Q96NR3 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.32■□□□□ 0.36
PTCHD1Q96NR3 AC104581.1-202ENST00000635932 2618 ntBASIC17.32■□□□□ 0.36
PTCHD1Q96NR3 RNF146-204ENST00000476956 884 ntTSL 2 BASIC17.32■□□□□ 0.36
PTCHD1Q96NR3 AC092597.1-201ENST00000487352 616 ntBASIC17.32■□□□□ 0.36
PTCHD1Q96NR3 TPM1-226ENST00000560959 925 ntTSL 2 BASIC17.32■□□□□ 0.36
PTCHD1Q96NR3 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC17.32■□□□□ 0.36
PTCHD1Q96NR3 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTCHD1Q96NR3 DFFB-212ENST00000625756 649 ntTSL 5 BASIC17.32■□□□□ 0.36
PTCHD1Q96NR3 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC17.32■□□□□ 0.36
PTCHD1Q96NR3 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC17.32■□□□□ 0.36
PTCHD1Q96NR3 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC17.32■□□□□ 0.36
PTCHD1Q96NR3 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTCHD1Q96NR3 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTCHD1Q96NR3 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTCHD1Q96NR3 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC17.32■□□□□ 0.36
PTCHD1Q96NR3 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PTCHD1Q96NR3 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
PTCHD1Q96NR3 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC17.32■□□□□ 0.36
PTCHD1Q96NR3 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC17.31■□□□□ 0.36
PTCHD1Q96NR3 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTCHD1Q96NR3 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PTCHD1Q96NR3 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC17.31■□□□□ 0.36
PTCHD1Q96NR3 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTCHD1Q96NR3 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC17.31■□□□□ 0.36
PTCHD1Q96NR3 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
PTCHD1Q96NR3 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTCHD1Q96NR3 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.31■□□□□ 0.36
PTCHD1Q96NR3 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PTCHD1Q96NR3 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTCHD1Q96NR3 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC17.31■□□□□ 0.36
PTCHD1Q96NR3 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTCHD1Q96NR3 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
PTCHD1Q96NR3 HTR7P1-202ENST00000624664 4411 ntBASIC17.31■□□□□ 0.36
PTCHD1Q96NR3 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTCHD1Q96NR3 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTCHD1Q96NR3 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTCHD1Q96NR3 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTCHD1Q96NR3 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTCHD1Q96NR3 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PTCHD1Q96NR3 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PTCHD1Q96NR3 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.31■□□□□ 0.36
PTCHD1Q96NR3 LY6E-213ENST00000522528 606 ntTSL 3 BASIC17.31■□□□□ 0.36
PTCHD1Q96NR3 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC17.31■□□□□ 0.36
PTCHD1Q96NR3 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC17.31■□□□□ 0.36
PTCHD1Q96NR3 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC17.31■□□□□ 0.36
PTCHD1Q96NR3 HYMAI.1-201ENST00000620949 238 ntBASIC17.31■□□□□ 0.36
PTCHD1Q96NR3 AC099343.3-201ENST00000605834 2503 ntBASIC17.31■□□□□ 0.36
PTCHD1Q96NR3 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PTCHD1Q96NR3 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
PTCHD1Q96NR3 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC17.31■□□□□ 0.36
PTCHD1Q96NR3 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTCHD1Q96NR3 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PTCHD1Q96NR3 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTCHD1Q96NR3 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTCHD1Q96NR3 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
PTCHD1Q96NR3 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PTCHD1Q96NR3 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PTCHD1Q96NR3 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTCHD1Q96NR3 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC17.3■□□□□ 0.36
PTCHD1Q96NR3 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTCHD1Q96NR3 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
PTCHD1Q96NR3 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTCHD1Q96NR3 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTCHD1Q96NR3 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTCHD1Q96NR3 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTCHD1Q96NR3 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTCHD1Q96NR3 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTCHD1Q96NR3 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC17.3■□□□□ 0.36
PTCHD1Q96NR3 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.3■□□□□ 0.36
PTCHD1Q96NR3 HBZP1-201ENST00000354915 429 ntBASIC17.3■□□□□ 0.36
PTCHD1Q96NR3 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms