Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC18.86■□□□□ 0.61
SKA1Q96BD8 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SKA1Q96BD8 Telomerase-vert.1-201ENST00000363312 438 ntBASIC18.86■□□□□ 0.61
SKA1Q96BD8 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SKA1Q96BD8 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC18.86■□□□□ 0.61
SKA1Q96BD8 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SKA1Q96BD8 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
SKA1Q96BD8 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC18.86■□□□□ 0.61
SKA1Q96BD8 NMU-205ENST00000511469 756 ntTSL 3 BASIC18.86■□□□□ 0.61
SKA1Q96BD8 ETFA-216ENST00000560726 942 ntTSL 3 BASIC18.86■□□□□ 0.61
SKA1Q96BD8 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC18.86■□□□□ 0.61
SKA1Q96BD8 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SKA1Q96BD8 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SKA1Q96BD8 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC18.86■□□□□ 0.61
SKA1Q96BD8 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SKA1Q96BD8 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SKA1Q96BD8 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SKA1Q96BD8 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
SKA1Q96BD8 ZNF815P-204ENST00000434898 1737 ntBASIC18.86■□□□□ 0.61
SKA1Q96BD8 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
SKA1Q96BD8 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SKA1Q96BD8 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SKA1Q96BD8 AC067852.2-201ENST00000590513 2313 ntBASIC18.85■□□□□ 0.61
SKA1Q96BD8 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SKA1Q96BD8 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
SKA1Q96BD8 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
SKA1Q96BD8 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SKA1Q96BD8 BUB3-202ENST00000368859 667 ntTSL 3 BASIC18.85■□□□□ 0.61
SKA1Q96BD8 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SKA1Q96BD8 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC18.85■□□□□ 0.61
SKA1Q96BD8 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC18.85■□□□□ 0.61
SKA1Q96BD8 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
SKA1Q96BD8 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SKA1Q96BD8 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC18.85■□□□□ 0.61
SKA1Q96BD8 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
SKA1Q96BD8 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SKA1Q96BD8 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SKA1Q96BD8 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
SKA1Q96BD8 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SKA1Q96BD8 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC18.84■□□□□ 0.61
SKA1Q96BD8 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
SKA1Q96BD8 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC18.84■□□□□ 0.61
SKA1Q96BD8 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC18.84■□□□□ 0.61
SKA1Q96BD8 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC18.84■□□□□ 0.61
SKA1Q96BD8 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
SKA1Q96BD8 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
SKA1Q96BD8 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SKA1Q96BD8 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC18.84■□□□□ 0.61
SKA1Q96BD8 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.84■□□□□ 0.61
SKA1Q96BD8 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
SKA1Q96BD8 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
SKA1Q96BD8 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SKA1Q96BD8 GAD2-202ENST00000376248 680 ntTSL 5 BASIC18.84■□□□□ 0.61
SKA1Q96BD8 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SKA1Q96BD8 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.84■□□□□ 0.61
SKA1Q96BD8 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC18.84■□□□□ 0.61
SKA1Q96BD8 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC18.84■□□□□ 0.61
SKA1Q96BD8 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC18.84■□□□□ 0.61
SKA1Q96BD8 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC18.84■□□□□ 0.61
SKA1Q96BD8 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC18.84■□□□□ 0.61
SKA1Q96BD8 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC18.84■□□□□ 0.61
SKA1Q96BD8 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
SKA1Q96BD8 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.84■□□□□ 0.61
SKA1Q96BD8 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SKA1Q96BD8 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SKA1Q96BD8 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
SKA1Q96BD8 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18.84■□□□□ 0.61
SKA1Q96BD8 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
SKA1Q96BD8 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
SKA1Q96BD8 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SKA1Q96BD8 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SKA1Q96BD8 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC18.83■□□□□ 0.61
SKA1Q96BD8 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SKA1Q96BD8 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
SKA1Q96BD8 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SKA1Q96BD8 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SKA1Q96BD8 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
SKA1Q96BD8 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.83■□□□□ 0.61
SKA1Q96BD8 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
SKA1Q96BD8 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC18.83■□□□□ 0.61
SKA1Q96BD8 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
SKA1Q96BD8 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
SKA1Q96BD8 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SKA1Q96BD8 VENTXP5-201ENST00000523979 775 ntBASIC18.83■□□□□ 0.6
SKA1Q96BD8 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC18.83■□□□□ 0.6
SKA1Q96BD8 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
SKA1Q96BD8 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SKA1Q96BD8 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SKA1Q96BD8 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SKA1Q96BD8 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SKA1Q96BD8 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SKA1Q96BD8 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SKA1Q96BD8 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.82■□□□□ 0.6
SKA1Q96BD8 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SKA1Q96BD8 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SKA1Q96BD8 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SKA1Q96BD8 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SKA1Q96BD8 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
SKA1Q96BD8 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SKA1Q96BD8 IRX1P1-201ENST00000438849 1838 ntBASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms