Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLRN3Q8NCR9 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CLRN3Q8NCR9 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 AC106886.4-201ENST00000623557 2502 ntBASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 AC093677.2-201ENST00000600169 1863 ntBASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN3Q8NCR9 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 TRIR-202ENST00000588213 841 ntTSL 3 BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN3Q8NCR9 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLRN3Q8NCR9 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLRN3Q8NCR9 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
CLRN3Q8NCR9 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLRN3Q8NCR9 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC14.65□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms