Protein–RNA interactions for Protein: P28288

ABCD3, ATP-binding cassette sub-family D member 3, humanhuman

Predictions only

Length 659 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD3P28288 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
ABCD3P28288 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ABCD3P28288 HLA-F-220ENST00000434407 884 ntBASIC16.92■□□□□ 0.3
ABCD3P28288 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC16.92■□□□□ 0.3
ABCD3P28288 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC16.92■□□□□ 0.3
ABCD3P28288 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
ABCD3P28288 LY6E-213ENST00000522528 606 ntTSL 3 BASIC16.92■□□□□ 0.3
ABCD3P28288 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC16.92■□□□□ 0.3
ABCD3P28288 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC16.92■□□□□ 0.3
ABCD3P28288 RMI2-205ENST00000576027 818 ntTSL 2 BASIC16.92■□□□□ 0.3
ABCD3P28288 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC16.92■□□□□ 0.3
ABCD3P28288 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC16.92■□□□□ 0.3
ABCD3P28288 AC083849.1-201ENST00000615227 514 ntBASIC16.92■□□□□ 0.3
ABCD3P28288 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
ABCD3P28288 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ABCD3P28288 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ABCD3P28288 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ABCD3P28288 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC16.92■□□□□ 0.3
ABCD3P28288 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ABCD3P28288 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
ABCD3P28288 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
ABCD3P28288 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ABCD3P28288 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
ABCD3P28288 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ABCD3P28288 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
ABCD3P28288 ADK-206ENST00000541550 2222 ntTSL 2 BASIC16.92■□□□□ 0.3
ABCD3P28288 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ABCD3P28288 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ABCD3P28288 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ABCD3P28288 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ABCD3P28288 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
ABCD3P28288 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ABCD3P28288 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
ABCD3P28288 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC16.91■□□□□ 0.3
ABCD3P28288 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ABCD3P28288 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ABCD3P28288 AL031133.1-201ENST00000406807 723 ntBASIC16.91■□□□□ 0.3
ABCD3P28288 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
ABCD3P28288 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC16.91■□□□□ 0.3
ABCD3P28288 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC16.91■□□□□ 0.3
ABCD3P28288 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC16.91■□□□□ 0.3
ABCD3P28288 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC16.91■□□□□ 0.3
ABCD3P28288 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
ABCD3P28288 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ABCD3P28288 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ABCD3P28288 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC16.91■□□□□ 0.3
ABCD3P28288 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
ABCD3P28288 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
ABCD3P28288 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC16.91■□□□□ 0.3
ABCD3P28288 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ABCD3P28288 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
ABCD3P28288 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC16.91■□□□□ 0.3
ABCD3P28288 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
ABCD3P28288 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ABCD3P28288 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ABCD3P28288 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ABCD3P28288 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ABCD3P28288 ASL-204ENST00000395331 1538 ntTSL 5 BASIC16.91■□□□□ 0.3
ABCD3P28288 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
ABCD3P28288 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC16.91■□□□□ 0.3
ABCD3P28288 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC16.9■□□□□ 0.3
ABCD3P28288 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ABCD3P28288 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
ABCD3P28288 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
ABCD3P28288 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ABCD3P28288 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC16.9■□□□□ 0.3
ABCD3P28288 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ABCD3P28288 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
ABCD3P28288 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ABCD3P28288 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC16.9■□□□□ 0.3
ABCD3P28288 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
ABCD3P28288 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
ABCD3P28288 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ABCD3P28288 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ABCD3P28288 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ABCD3P28288 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ABCD3P28288 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ABCD3P28288 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ABCD3P28288 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ABCD3P28288 ZNF444P1-201ENST00000559497 298 ntBASIC16.9■□□□□ 0.3
ABCD3P28288 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
ABCD3P28288 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ABCD3P28288 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC16.9■□□□□ 0.3
ABCD3P28288 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC16.9■□□□□ 0.3
ABCD3P28288 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ABCD3P28288 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ABCD3P28288 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC16.9■□□□□ 0.3
ABCD3P28288 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ABCD3P28288 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ABCD3P28288 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ABCD3P28288 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.3
ABCD3P28288 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC16.89■□□□□ 0.3
ABCD3P28288 AC104581.1-202ENST00000635932 2618 ntBASIC16.89■□□□□ 0.29
ABCD3P28288 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ABCD3P28288 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC16.89■□□□□ 0.29
ABCD3P28288 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC16.89■□□□□ 0.29
ABCD3P28288 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
ABCD3P28288 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC16.89■□□□□ 0.29
ABCD3P28288 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ABCD3P28288 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms