Protein–RNA interactions for Protein: P26640

VARS, Valine--tRNA ligase, humanhuman

Known RBP Predictions only

Length 1,264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VARSP26640 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.08■□□□□ 0.48
VARSP26640 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
VARSP26640 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
VARSP26640 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC18.08■□□□□ 0.48
VARSP26640 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
VARSP26640 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
VARSP26640 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
VARSP26640 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VARSP26640 KRT8P9-201ENST00000558927 1449 ntBASIC18.07■□□□□ 0.48
VARSP26640 MADD-208ENST00000405573 1823 ntTSL 5 BASIC18.07■□□□□ 0.48
VARSP26640 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
VARSP26640 AL499627.1-201ENST00000569373 2188 ntBASIC18.07■□□□□ 0.48
VARSP26640 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
VARSP26640 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
VARSP26640 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
VARSP26640 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VARSP26640 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VARSP26640 GPAT2P1-201ENST00000444924 1672 ntBASIC18.07■□□□□ 0.48
VARSP26640 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
VARSP26640 HIST1H2APS4-201ENST00000362070 348 ntBASIC18.07■□□□□ 0.48
VARSP26640 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
VARSP26640 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC18.07■□□□□ 0.48
VARSP26640 ATP5G1P1-201ENST00000448724 379 ntBASIC18.07■□□□□ 0.48
VARSP26640 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC18.07■□□□□ 0.48
VARSP26640 TMA16-209ENST00000513272 803 ntTSL 2 BASIC18.07■□□□□ 0.48
VARSP26640 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VARSP26640 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
VARSP26640 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
VARSP26640 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
VARSP26640 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VARSP26640 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC18.07■□□□□ 0.48
VARSP26640 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
VARSP26640 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
VARSP26640 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
VARSP26640 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
VARSP26640 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC18.07■□□□□ 0.48
VARSP26640 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VARSP26640 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VARSP26640 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
VARSP26640 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.06■□□□□ 0.48
VARSP26640 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.06■□□□□ 0.48
VARSP26640 AC008556.1-201ENST00000610908 2040 ntBASIC18.06■□□□□ 0.48
VARSP26640 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VARSP26640 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC18.06■□□□□ 0.48
VARSP26640 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VARSP26640 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
VARSP26640 AL023284.2-201ENST00000405850 579 ntBASIC18.06■□□□□ 0.48
VARSP26640 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC18.06■□□□□ 0.48
VARSP26640 CA15P1-201ENST00000481698 905 ntBASIC18.06■□□□□ 0.48
VARSP26640 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC18.06■□□□□ 0.48
VARSP26640 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC18.06■□□□□ 0.48
VARSP26640 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC18.06■□□□□ 0.48
VARSP26640 LTBR-211ENST00000543190 785 ntTSL 3 BASIC18.06■□□□□ 0.48
VARSP26640 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
VARSP26640 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC18.06■□□□□ 0.48
VARSP26640 AL357033.4-201ENST00000617703 1807 ntBASIC18.06■□□□□ 0.48
VARSP26640 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VARSP26640 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VARSP26640 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
VARSP26640 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VARSP26640 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VARSP26640 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VARSP26640 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC18.06■□□□□ 0.48
VARSP26640 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VARSP26640 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VARSP26640 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
VARSP26640 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
VARSP26640 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
VARSP26640 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VARSP26640 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.06■□□□□ 0.48
VARSP26640 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
VARSP26640 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC18.05■□□□□ 0.48
VARSP26640 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VARSP26640 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18.05■□□□□ 0.48
VARSP26640 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
VARSP26640 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC18.05■□□□□ 0.48
VARSP26640 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.05■□□□□ 0.48
VARSP26640 AC073592.3-201ENST00000625118 1834 ntBASIC18.05■□□□□ 0.48
VARSP26640 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VARSP26640 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VARSP26640 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
VARSP26640 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VARSP26640 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
VARSP26640 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
VARSP26640 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
VARSP26640 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
VARSP26640 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VARSP26640 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
VARSP26640 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.05■□□□□ 0.48
VARSP26640 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
VARSP26640 AC128688.1-201ENST00000487626 519 ntBASIC18.05■□□□□ 0.48
VARSP26640 DUX4L26-201ENST00000489078 1255 ntBASIC18.05■□□□□ 0.48
VARSP26640 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC18.05■□□□□ 0.48
VARSP26640 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC18.05■□□□□ 0.48
VARSP26640 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC18.05■□□□□ 0.48
VARSP26640 AC087388.1-201ENST00000571370 1112 ntBASIC18.05■□□□□ 0.48
VARSP26640 MIR4674-201ENST00000582457 87 ntBASIC18.05■□□□□ 0.48
VARSP26640 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VARSP26640 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VARSP26640 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms