Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC17.78■□□□□ 0.44
LDLRP01130 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC17.78■□□□□ 0.44
LDLRP01130 AL121906.2-201ENST00000621597 723 ntBASIC17.78■□□□□ 0.44
LDLRP01130 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC17.78■□□□□ 0.44
LDLRP01130 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LDLRP01130 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LDLRP01130 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
LDLRP01130 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
LDLRP01130 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
LDLRP01130 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC17.78■□□□□ 0.44
LDLRP01130 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LDLRP01130 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
LDLRP01130 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
LDLRP01130 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
LDLRP01130 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LDLRP01130 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC17.77■□□□□ 0.44
LDLRP01130 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
LDLRP01130 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LDLRP01130 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
LDLRP01130 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
LDLRP01130 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
LDLRP01130 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
LDLRP01130 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
LDLRP01130 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC17.77■□□□□ 0.44
LDLRP01130 TPM4P1-201ENST00000436100 807 ntBASIC17.77■□□□□ 0.44
LDLRP01130 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
LDLRP01130 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC17.77■□□□□ 0.44
LDLRP01130 KSR1P1-201ENST00000446298 240 ntBASIC17.77■□□□□ 0.44
LDLRP01130 ATP5G1P1-201ENST00000448724 379 ntBASIC17.77■□□□□ 0.44
LDLRP01130 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
LDLRP01130 NMU-205ENST00000511469 756 ntTSL 3 BASIC17.77■□□□□ 0.44
LDLRP01130 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC17.77■□□□□ 0.44
LDLRP01130 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
LDLRP01130 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
LDLRP01130 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC17.77■□□□□ 0.44
LDLRP01130 CR392000.1-201ENST00000624770 1228 ntBASIC17.77■□□□□ 0.44
LDLRP01130 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
LDLRP01130 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
LDLRP01130 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
LDLRP01130 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
LDLRP01130 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
LDLRP01130 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LDLRP01130 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LDLRP01130 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LDLRP01130 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LDLRP01130 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LDLRP01130 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC17.76■□□□□ 0.43
LDLRP01130 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LDLRP01130 LGALS8-AS1-201ENST00000487567 1457 ntBASIC17.76■□□□□ 0.43
LDLRP01130 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LDLRP01130 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
LDLRP01130 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
LDLRP01130 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
LDLRP01130 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LDLRP01130 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LDLRP01130 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LDLRP01130 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
LDLRP01130 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
LDLRP01130 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LDLRP01130 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC17.76■□□□□ 0.43
LDLRP01130 NME1-207ENST00000480143 964 ntTSL 2 BASIC17.76■□□□□ 0.43
LDLRP01130 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LDLRP01130 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC17.76■□□□□ 0.43
LDLRP01130 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC17.76■□□□□ 0.43
LDLRP01130 AC126763.1-201ENST00000552015 2118 ntBASIC17.76■□□□□ 0.43
LDLRP01130 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC17.76■□□□□ 0.43
LDLRP01130 PNN-205ENST00000556530 601 ntTSL 2 BASIC17.76■□□□□ 0.43
LDLRP01130 METTL23-204ENST00000586752 904 ntTSL 2 BASIC17.76■□□□□ 0.43
LDLRP01130 AL121894.2-201ENST00000602977 491 ntBASIC17.76■□□□□ 0.43
LDLRP01130 AL358472.4-201ENST00000633140 710 ntBASIC17.76■□□□□ 0.43
LDLRP01130 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
LDLRP01130 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.76■□□□□ 0.43
LDLRP01130 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
LDLRP01130 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LDLRP01130 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
LDLRP01130 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
LDLRP01130 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
LDLRP01130 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LDLRP01130 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
LDLRP01130 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.76■□□□□ 0.43
LDLRP01130 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
LDLRP01130 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LDLRP01130 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.76■□□□□ 0.43
LDLRP01130 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LDLRP01130 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.76■□□□□ 0.43
LDLRP01130 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC17.76■□□□□ 0.43
LDLRP01130 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
LDLRP01130 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LDLRP01130 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC17.75■□□□□ 0.43
LDLRP01130 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
LDLRP01130 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
LDLRP01130 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LDLRP01130 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.75■□□□□ 0.43
LDLRP01130 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
LDLRP01130 GUK1-204ENST00000366721 689 ntTSL 3 BASIC17.75■□□□□ 0.43
LDLRP01130 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC17.75■□□□□ 0.43
LDLRP01130 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC17.75■□□□□ 0.43
LDLRP01130 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC17.75■□□□□ 0.43
LDLRP01130 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC17.75■□□□□ 0.43
LDLRP01130 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms