Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
PRPF40AO75400 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
PRPF40AO75400 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC21.4■■□□□ 1.02
PRPF40AO75400 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC21.4■■□□□ 1.02
PRPF40AO75400 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
PRPF40AO75400 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PRPF40AO75400 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PRPF40AO75400 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PRPF40AO75400 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
PRPF40AO75400 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC21.4■■□□□ 1.02
PRPF40AO75400 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PRPF40AO75400 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PRPF40AO75400 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PRPF40AO75400 MYLKP1-201ENST00000509077 1580 ntBASIC21.4■■□□□ 1.02
PRPF40AO75400 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
PRPF40AO75400 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
PRPF40AO75400 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
PRPF40AO75400 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
PRPF40AO75400 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
PRPF40AO75400 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
PRPF40AO75400 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
PRPF40AO75400 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PRPF40AO75400 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC21.39■■□□□ 1.01
PRPF40AO75400 GCSHP5-201ENST00000443090 522 ntBASIC21.39■■□□□ 1.01
PRPF40AO75400 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
PRPF40AO75400 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC21.39■■□□□ 1.01
PRPF40AO75400 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC21.39■■□□□ 1.01
PRPF40AO75400 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC21.39■■□□□ 1.01
PRPF40AO75400 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC21.39■■□□□ 1.01
PRPF40AO75400 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC21.39■■□□□ 1.01
PRPF40AO75400 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PRPF40AO75400 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
PRPF40AO75400 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
PRPF40AO75400 FLJ13224-201ENST00000313737 1514 ntBASIC21.39■■□□□ 1.01
PRPF40AO75400 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
PRPF40AO75400 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
PRPF40AO75400 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
PRPF40AO75400 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC21.38■■□□□ 1.01
PRPF40AO75400 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PRPF40AO75400 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC21.38■■□□□ 1.01
PRPF40AO75400 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
PRPF40AO75400 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
PRPF40AO75400 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
PRPF40AO75400 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
PRPF40AO75400 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
PRPF40AO75400 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
PRPF40AO75400 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC21.38■■□□□ 1.01
PRPF40AO75400 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC21.38■■□□□ 1.01
PRPF40AO75400 MTDHP1-201ENST00000605323 784 ntBASIC21.38■■□□□ 1.01
PRPF40AO75400 PP12613-201ENST00000424958 2230 ntBASIC21.38■■□□□ 1.01
PRPF40AO75400 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PRPF40AO75400 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PRPF40AO75400 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
PRPF40AO75400 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
PRPF40AO75400 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC21.38■■□□□ 1.01
PRPF40AO75400 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
PRPF40AO75400 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
PRPF40AO75400 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PRPF40AO75400 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PRPF40AO75400 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PRPF40AO75400 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC21.38■■□□□ 1.01
PRPF40AO75400 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PRPF40AO75400 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
PRPF40AO75400 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC21.37■■□□□ 1.01
PRPF40AO75400 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PRPF40AO75400 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC21.37■■□□□ 1.01
PRPF40AO75400 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
PRPF40AO75400 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC21.37■■□□□ 1.01
PRPF40AO75400 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PRPF40AO75400 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PRPF40AO75400 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC21.37■■□□□ 1.01
PRPF40AO75400 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
PRPF40AO75400 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PRPF40AO75400 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PRPF40AO75400 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC21.37■■□□□ 1.01
PRPF40AO75400 DET1-205ENST00000558413 583 ntTSL 4 BASIC21.37■■□□□ 1.01
PRPF40AO75400 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC21.37■■□□□ 1.01
PRPF40AO75400 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC21.37■■□□□ 1.01
PRPF40AO75400 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC21.37■■□□□ 1.01
PRPF40AO75400 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
PRPF40AO75400 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PRPF40AO75400 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
PRPF40AO75400 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PRPF40AO75400 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PRPF40AO75400 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
PRPF40AO75400 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
PRPF40AO75400 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC21.37■■□□□ 1.01
PRPF40AO75400 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
PRPF40AO75400 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC21.37■■□□□ 1.01
PRPF40AO75400 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
PRPF40AO75400 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PRPF40AO75400 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
PRPF40AO75400 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
PRPF40AO75400 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC21.36■■□□□ 1.01
PRPF40AO75400 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
PRPF40AO75400 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC21.36■■□□□ 1.01
PRPF40AO75400 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PRPF40AO75400 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
PRPF40AO75400 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
PRPF40AO75400 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC21.36■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms