Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 AC009102.3-201ENST00000623118 1491 ntBASIC17.31■□□□□ 0.36
LDB3O75112 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LDB3O75112 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LDB3O75112 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC17.3■□□□□ 0.36
LDB3O75112 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LDB3O75112 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.3■□□□□ 0.36
LDB3O75112 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LDB3O75112 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
LDB3O75112 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC17.3■□□□□ 0.36
LDB3O75112 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.3■□□□□ 0.36
LDB3O75112 SDHAP2-201ENST00000455183 2001 ntBASIC17.3■□□□□ 0.36
LDB3O75112 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LDB3O75112 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
LDB3O75112 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC17.3■□□□□ 0.36
LDB3O75112 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC17.3■□□□□ 0.36
LDB3O75112 KRT18P38-201ENST00000449496 1282 ntBASIC17.3■□□□□ 0.36
LDB3O75112 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC17.3■□□□□ 0.36
LDB3O75112 AC063952.2-201ENST00000498792 1227 ntBASIC17.3■□□□□ 0.36
LDB3O75112 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC17.3■□□□□ 0.36
LDB3O75112 AL049597.2-201ENST00000565575 961 ntBASIC17.3■□□□□ 0.36
LDB3O75112 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC17.3■□□□□ 0.36
LDB3O75112 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC17.3■□□□□ 0.36
LDB3O75112 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LDB3O75112 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC17.3■□□□□ 0.36
LDB3O75112 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LDB3O75112 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.3■□□□□ 0.36
LDB3O75112 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
LDB3O75112 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LDB3O75112 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC17.29■□□□□ 0.36
LDB3O75112 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC17.29■□□□□ 0.36
LDB3O75112 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC17.29■□□□□ 0.36
LDB3O75112 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LDB3O75112 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LDB3O75112 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LDB3O75112 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LDB3O75112 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LDB3O75112 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
LDB3O75112 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
LDB3O75112 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LDB3O75112 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LDB3O75112 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
LDB3O75112 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LDB3O75112 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
LDB3O75112 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LDB3O75112 MIR149-201ENST00000384879 89 ntBASIC17.29■□□□□ 0.36
LDB3O75112 STARP1-201ENST00000397973 869 ntBASIC17.29■□□□□ 0.36
LDB3O75112 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LDB3O75112 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LDB3O75112 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC17.29■□□□□ 0.36
LDB3O75112 AC022616.7-201ENST00000525383 220 ntBASIC17.29■□□□□ 0.36
LDB3O75112 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
LDB3O75112 MIR3180-4-201ENST00000582223 153 ntBASIC17.29■□□□□ 0.36
LDB3O75112 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC17.29■□□□□ 0.36
LDB3O75112 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17.29■□□□□ 0.36
LDB3O75112 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC17.29■□□□□ 0.36
LDB3O75112 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
LDB3O75112 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LDB3O75112 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
LDB3O75112 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.29■□□□□ 0.36
LDB3O75112 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
LDB3O75112 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LDB3O75112 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC17.28■□□□□ 0.36
LDB3O75112 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
LDB3O75112 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
LDB3O75112 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
LDB3O75112 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
LDB3O75112 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
LDB3O75112 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC17.28■□□□□ 0.36
LDB3O75112 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
LDB3O75112 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LDB3O75112 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LDB3O75112 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LDB3O75112 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC17.28■□□□□ 0.36
LDB3O75112 HOMER2P1-201ENST00000455653 964 ntBASIC17.28■□□□□ 0.36
LDB3O75112 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LDB3O75112 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LDB3O75112 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
LDB3O75112 AC009065.1-201ENST00000564055 1225 ntBASIC17.28■□□□□ 0.36
LDB3O75112 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC17.28■□□□□ 0.36
LDB3O75112 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC17.28■□□□□ 0.36
LDB3O75112 USF2-205ENST00000594064 1179 ntTSL 2 BASIC17.28■□□□□ 0.36
LDB3O75112 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
LDB3O75112 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LDB3O75112 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LDB3O75112 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.28■□□□□ 0.36
LDB3O75112 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
LDB3O75112 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LDB3O75112 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LDB3O75112 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.28■□□□□ 0.36
LDB3O75112 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LDB3O75112 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.28■□□□□ 0.36
LDB3O75112 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LDB3O75112 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
LDB3O75112 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC17.28■□□□□ 0.36
LDB3O75112 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
LDB3O75112 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
LDB3O75112 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LDB3O75112 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
LDB3O75112 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
LDB3O75112 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms