Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
PCDHA3Q9Y5H8 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PCDHA3Q9Y5H8 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC19.25■□□□□ 0.67
PCDHA3Q9Y5H8 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC19.25■□□□□ 0.67
PCDHA3Q9Y5H8 CYP51A1P1-201ENST00000492267 1507 ntBASIC19.25■□□□□ 0.67
PCDHA3Q9Y5H8 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC19.25■□□□□ 0.67
PCDHA3Q9Y5H8 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PCDHA3Q9Y5H8 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
PCDHA3Q9Y5H8 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PCDHA3Q9Y5H8 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
PCDHA3Q9Y5H8 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
PCDHA3Q9Y5H8 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PCDHA3Q9Y5H8 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PCDHA3Q9Y5H8 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PCDHA3Q9Y5H8 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PCDHA3Q9Y5H8 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC19.24■□□□□ 0.67
PCDHA3Q9Y5H8 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC19.24■□□□□ 0.67
PCDHA3Q9Y5H8 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PCDHA3Q9Y5H8 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC19.24■□□□□ 0.67
PCDHA3Q9Y5H8 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC19.24■□□□□ 0.67
PCDHA3Q9Y5H8 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC19.24■□□□□ 0.67
PCDHA3Q9Y5H8 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PCDHA3Q9Y5H8 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC19.24■□□□□ 0.67
PCDHA3Q9Y5H8 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
PCDHA3Q9Y5H8 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
PCDHA3Q9Y5H8 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC19.24■□□□□ 0.67
PCDHA3Q9Y5H8 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
PCDHA3Q9Y5H8 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC19.24■□□□□ 0.67
PCDHA3Q9Y5H8 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PCDHA3Q9Y5H8 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC19.24■□□□□ 0.67
PCDHA3Q9Y5H8 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC19.24■□□□□ 0.67
PCDHA3Q9Y5H8 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
PCDHA3Q9Y5H8 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC19.24■□□□□ 0.67
PCDHA3Q9Y5H8 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PCDHA3Q9Y5H8 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC19.24■□□□□ 0.67
PCDHA3Q9Y5H8 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC19.24■□□□□ 0.67
PCDHA3Q9Y5H8 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC19.24■□□□□ 0.67
PCDHA3Q9Y5H8 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PCDHA3Q9Y5H8 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PCDHA3Q9Y5H8 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
PCDHA3Q9Y5H8 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PCDHA3Q9Y5H8 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
PCDHA3Q9Y5H8 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC19.24■□□□□ 0.67
PCDHA3Q9Y5H8 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC19.24■□□□□ 0.67
PCDHA3Q9Y5H8 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PCDHA3Q9Y5H8 LINC00896-202ENST00000609602 2128 ntBASIC19.24■□□□□ 0.67
PCDHA3Q9Y5H8 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
PCDHA3Q9Y5H8 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PCDHA3Q9Y5H8 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PCDHA3Q9Y5H8 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC19.23■□□□□ 0.67
PCDHA3Q9Y5H8 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PCDHA3Q9Y5H8 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PCDHA3Q9Y5H8 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC19.23■□□□□ 0.67
PCDHA3Q9Y5H8 GNE-204ENST00000539208 2190 ntTSL 2 BASIC19.23■□□□□ 0.67
PCDHA3Q9Y5H8 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC19.23■□□□□ 0.67
PCDHA3Q9Y5H8 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PCDHA3Q9Y5H8 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PCDHA3Q9Y5H8 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC19.23■□□□□ 0.67
PCDHA3Q9Y5H8 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PCDHA3Q9Y5H8 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
PCDHA3Q9Y5H8 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PCDHA3Q9Y5H8 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PCDHA3Q9Y5H8 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC19.23■□□□□ 0.67
PCDHA3Q9Y5H8 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
PCDHA3Q9Y5H8 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC19.23■□□□□ 0.67
PCDHA3Q9Y5H8 GCSHP5-201ENST00000443090 522 ntBASIC19.23■□□□□ 0.67
PCDHA3Q9Y5H8 PENK-204ENST00000518770 863 ntTSL 2 BASIC19.23■□□□□ 0.67
PCDHA3Q9Y5H8 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC19.23■□□□□ 0.67
PCDHA3Q9Y5H8 REXO2-216ENST00000544196 452 ntTSL 3 BASIC19.23■□□□□ 0.67
PCDHA3Q9Y5H8 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC19.23■□□□□ 0.67
PCDHA3Q9Y5H8 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC19.23■□□□□ 0.67
PCDHA3Q9Y5H8 AP005242.2-201ENST00000580065 1175 ntBASIC19.23■□□□□ 0.67
PCDHA3Q9Y5H8 GRAMD4P8-201ENST00000605465 1115 ntBASIC19.23■□□□□ 0.67
PCDHA3Q9Y5H8 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
PCDHA3Q9Y5H8 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
PCDHA3Q9Y5H8 HOXB1-202ENST00000577092 1414 ntBASIC19.23■□□□□ 0.67
PCDHA3Q9Y5H8 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PCDHA3Q9Y5H8 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
PCDHA3Q9Y5H8 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC19.23■□□□□ 0.67
PCDHA3Q9Y5H8 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PCDHA3Q9Y5H8 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
PCDHA3Q9Y5H8 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC19.22■□□□□ 0.67
PCDHA3Q9Y5H8 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PCDHA3Q9Y5H8 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
PCDHA3Q9Y5H8 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PCDHA3Q9Y5H8 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PCDHA3Q9Y5H8 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PCDHA3Q9Y5H8 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PCDHA3Q9Y5H8 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PCDHA3Q9Y5H8 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC19.22■□□□□ 0.67
PCDHA3Q9Y5H8 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
PCDHA3Q9Y5H8 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PCDHA3Q9Y5H8 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC19.22■□□□□ 0.67
PCDHA3Q9Y5H8 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PCDHA3Q9Y5H8 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PCDHA3Q9Y5H8 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
PCDHA3Q9Y5H8 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PCDHA3Q9Y5H8 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC19.22■□□□□ 0.67
PCDHA3Q9Y5H8 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC19.22■□□□□ 0.67
PCDHA3Q9Y5H8 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms