Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SSU72Q9NP77 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
SSU72Q9NP77 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC18.28■□□□□ 0.52
SSU72Q9NP77 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
SSU72Q9NP77 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SSU72Q9NP77 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
SSU72Q9NP77 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC18.28■□□□□ 0.52
SSU72Q9NP77 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC18.28■□□□□ 0.52
SSU72Q9NP77 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.28■□□□□ 0.52
SSU72Q9NP77 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SSU72Q9NP77 AD000864.1-201ENST00000624076 2295 ntBASIC18.28■□□□□ 0.52
SSU72Q9NP77 AC012313.1-201ENST00000593393 3059 ntBASIC18.28■□□□□ 0.52
SSU72Q9NP77 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC18.28■□□□□ 0.52
SSU72Q9NP77 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC18.28■□□□□ 0.52
SSU72Q9NP77 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC18.28■□□□□ 0.52
SSU72Q9NP77 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
SSU72Q9NP77 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
SSU72Q9NP77 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
SSU72Q9NP77 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC18.28■□□□□ 0.52
SSU72Q9NP77 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC18.28■□□□□ 0.52
SSU72Q9NP77 UNC93B5-201ENST00000530315 699 ntBASIC18.28■□□□□ 0.52
SSU72Q9NP77 AL137784.2-201ENST00000607332 1000 ntBASIC18.28■□□□□ 0.52
SSU72Q9NP77 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC18.28■□□□□ 0.52
SSU72Q9NP77 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
SSU72Q9NP77 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SSU72Q9NP77 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SSU72Q9NP77 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SSU72Q9NP77 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
SSU72Q9NP77 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SSU72Q9NP77 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SSU72Q9NP77 AC090340.1-201ENST00000620778 4980 ntBASIC18.28■□□□□ 0.52
SSU72Q9NP77 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SSU72Q9NP77 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC18.27■□□□□ 0.52
SSU72Q9NP77 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.52
SSU72Q9NP77 AC034236.2-201ENST00000606662 1610 ntBASIC18.27■□□□□ 0.52
SSU72Q9NP77 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
SSU72Q9NP77 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
SSU72Q9NP77 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SSU72Q9NP77 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
SSU72Q9NP77 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
SSU72Q9NP77 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SSU72Q9NP77 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SSU72Q9NP77 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
SSU72Q9NP77 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
SSU72Q9NP77 AC004951.3-201ENST00000418645 1148 ntBASIC18.27■□□□□ 0.52
SSU72Q9NP77 NIFKP9-201ENST00000419265 221 ntBASIC18.27■□□□□ 0.52
SSU72Q9NP77 PPP1R14BP5-201ENST00000440334 435 ntBASIC18.27■□□□□ 0.52
SSU72Q9NP77 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC18.27■□□□□ 0.52
SSU72Q9NP77 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
SSU72Q9NP77 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC18.27■□□□□ 0.52
SSU72Q9NP77 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC18.27■□□□□ 0.52
SSU72Q9NP77 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC18.27■□□□□ 0.52
SSU72Q9NP77 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC18.27■□□□□ 0.52
SSU72Q9NP77 BANP-227ENST00000626016 2144 ntTSL 2 BASIC18.27■□□□□ 0.52
SSU72Q9NP77 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC18.27■□□□□ 0.52
SSU72Q9NP77 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
SSU72Q9NP77 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
SSU72Q9NP77 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
SSU72Q9NP77 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
SSU72Q9NP77 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
SSU72Q9NP77 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
SSU72Q9NP77 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SSU72Q9NP77 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC18.26■□□□□ 0.51
SSU72Q9NP77 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.26■□□□□ 0.51
SSU72Q9NP77 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC18.26■□□□□ 0.51
SSU72Q9NP77 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
SSU72Q9NP77 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SSU72Q9NP77 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SSU72Q9NP77 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SSU72Q9NP77 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SSU72Q9NP77 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
SSU72Q9NP77 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SSU72Q9NP77 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SSU72Q9NP77 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SSU72Q9NP77 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SSU72Q9NP77 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SSU72Q9NP77 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SSU72Q9NP77 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC18.26■□□□□ 0.51
SSU72Q9NP77 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC18.26■□□□□ 0.51
SSU72Q9NP77 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC18.26■□□□□ 0.51
SSU72Q9NP77 AC008403.3-201ENST00000598924 454 ntBASIC18.26■□□□□ 0.51
SSU72Q9NP77 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC18.26■□□□□ 0.51
SSU72Q9NP77 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC18.26■□□□□ 0.51
SSU72Q9NP77 AC133041.1-202ENST00000642053 222 ntBASIC18.26■□□□□ 0.51
SSU72Q9NP77 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SSU72Q9NP77 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SSU72Q9NP77 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SSU72Q9NP77 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SSU72Q9NP77 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SSU72Q9NP77 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SSU72Q9NP77 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.26■□□□□ 0.51
SSU72Q9NP77 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
SSU72Q9NP77 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC18.26■□□□□ 0.51
SSU72Q9NP77 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SSU72Q9NP77 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC18.26■□□□□ 0.51
SSU72Q9NP77 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SSU72Q9NP77 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC18.26■□□□□ 0.51
SSU72Q9NP77 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SSU72Q9NP77 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SSU72Q9NP77 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms