Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
H3F3AP84243 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
H3F3AP84243 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
H3F3AP84243 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
H3F3AP84243 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
H3F3AP84243 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
H3F3AP84243 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC16.46■□□□□ 0.23
H3F3AP84243 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
H3F3AP84243 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC16.46■□□□□ 0.23
H3F3AP84243 HOMER2P1-201ENST00000455653 964 ntBASIC16.46■□□□□ 0.23
H3F3AP84243 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC16.46■□□□□ 0.23
H3F3AP84243 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
H3F3AP84243 AC063952.2-201ENST00000498792 1227 ntBASIC16.46■□□□□ 0.23
H3F3AP84243 KRT18P21-201ENST00000515767 1272 ntBASIC16.46■□□□□ 0.23
H3F3AP84243 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
H3F3AP84243 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC16.46■□□□□ 0.23
H3F3AP84243 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC16.46■□□□□ 0.23
H3F3AP84243 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC16.46■□□□□ 0.23
H3F3AP84243 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC16.46■□□□□ 0.23
H3F3AP84243 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
H3F3AP84243 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.22
H3F3AP84243 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
H3F3AP84243 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
H3F3AP84243 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
H3F3AP84243 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
H3F3AP84243 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.22
H3F3AP84243 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.22
H3F3AP84243 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
H3F3AP84243 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC16.45■□□□□ 0.22
H3F3AP84243 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC16.45■□□□□ 0.22
H3F3AP84243 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC16.45■□□□□ 0.22
H3F3AP84243 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
H3F3AP84243 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
H3F3AP84243 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
H3F3AP84243 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
H3F3AP84243 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
H3F3AP84243 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
H3F3AP84243 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
H3F3AP84243 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
H3F3AP84243 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
H3F3AP84243 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
H3F3AP84243 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
H3F3AP84243 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC16.45■□□□□ 0.22
H3F3AP84243 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
H3F3AP84243 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC16.45■□□□□ 0.22
H3F3AP84243 RASA4DP-201ENST00000460726 1199 ntBASIC16.45■□□□□ 0.22
H3F3AP84243 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC16.45■□□□□ 0.22
H3F3AP84243 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
H3F3AP84243 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC16.45■□□□□ 0.22
H3F3AP84243 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
H3F3AP84243 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
H3F3AP84243 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC16.45■□□□□ 0.22
H3F3AP84243 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
H3F3AP84243 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC16.45■□□□□ 0.22
H3F3AP84243 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
H3F3AP84243 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
H3F3AP84243 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
H3F3AP84243 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC16.45■□□□□ 0.22
H3F3AP84243 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
H3F3AP84243 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
H3F3AP84243 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC16.45■□□□□ 0.22
H3F3AP84243 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC16.45■□□□□ 0.22
H3F3AP84243 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
H3F3AP84243 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC16.45■□□□□ 0.22
H3F3AP84243 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
H3F3AP84243 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
H3F3AP84243 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
H3F3AP84243 AC104581.1-202ENST00000635932 2618 ntBASIC16.45■□□□□ 0.22
H3F3AP84243 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
H3F3AP84243 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
H3F3AP84243 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
H3F3AP84243 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
H3F3AP84243 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
H3F3AP84243 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
H3F3AP84243 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
H3F3AP84243 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
H3F3AP84243 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
H3F3AP84243 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC16.44■□□□□ 0.22
H3F3AP84243 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
H3F3AP84243 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
H3F3AP84243 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
H3F3AP84243 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
H3F3AP84243 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
H3F3AP84243 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
H3F3AP84243 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
H3F3AP84243 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
H3F3AP84243 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
H3F3AP84243 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
H3F3AP84243 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC16.44■□□□□ 0.22
H3F3AP84243 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
H3F3AP84243 FAM8A6P-201ENST00000407496 1135 ntBASIC16.44■□□□□ 0.22
H3F3AP84243 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC16.44■□□□□ 0.22
H3F3AP84243 SNX5-210ENST00000481323 562 ntTSL 3 BASIC16.44■□□□□ 0.22
H3F3AP84243 DUX4L26-201ENST00000489078 1255 ntBASIC16.44■□□□□ 0.22
H3F3AP84243 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC16.44■□□□□ 0.22
H3F3AP84243 REEP1-209ENST00000541910 969 ntTSL 2 BASIC16.44■□□□□ 0.22
H3F3AP84243 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
H3F3AP84243 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
H3F3AP84243 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
H3F3AP84243 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms