Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA3P55318 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA3P55318 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
FOXA3P55318 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA3P55318 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA3P55318 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA3P55318 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA3P55318 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
FOXA3P55318 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA3P55318 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
FOXA3P55318 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC13.84□□□□□ -0.19
FOXA3P55318 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC13.84□□□□□ -0.19
FOXA3P55318 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC13.84□□□□□ -0.19
FOXA3P55318 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
FOXA3P55318 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC13.84□□□□□ -0.19
FOXA3P55318 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
FOXA3P55318 AC068587.9-201ENST00000641814 219 ntBASIC13.84□□□□□ -0.19
FOXA3P55318 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC13.84□□□□□ -0.19
FOXA3P55318 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA3P55318 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC13.84□□□□□ -0.19
FOXA3P55318 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA3P55318 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA3P55318 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA3P55318 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA3P55318 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
FOXA3P55318 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA3P55318 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA3P55318 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC13.84□□□□□ -0.19
FOXA3P55318 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA3P55318 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA3P55318 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA3P55318 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
FOXA3P55318 NFIC-211ENST00000641145 8399 ntBASIC13.84□□□□□ -0.19
FOXA3P55318 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA3P55318 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
FOXA3P55318 RCC2P6-201ENST00000526625 1557 ntBASIC13.83□□□□□ -0.19
FOXA3P55318 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
FOXA3P55318 NARF-204ENST00000390006 1766 ntTSL 2 BASIC13.83□□□□□ -0.19
FOXA3P55318 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.19
FOXA3P55318 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC13.83□□□□□ -0.19
FOXA3P55318 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
FOXA3P55318 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.19
FOXA3P55318 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC13.83□□□□□ -0.2
FOXA3P55318 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
FOXA3P55318 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA3P55318 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA3P55318 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA3P55318 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
FOXA3P55318 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA3P55318 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA3P55318 STX7-201ENST00000367937 1090 ntTSL 5 BASIC13.83□□□□□ -0.2
FOXA3P55318 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC13.83□□□□□ -0.2
FOXA3P55318 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA3P55318 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA3P55318 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC13.83□□□□□ -0.2
FOXA3P55318 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
FOXA3P55318 DBI-210ENST00000542275 757 ntTSL 5 BASIC13.83□□□□□ -0.2
FOXA3P55318 DUX4L16-201ENST00000555130 1264 ntBASIC13.83□□□□□ -0.2
FOXA3P55318 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC13.83□□□□□ -0.2
FOXA3P55318 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA3P55318 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA3P55318 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA3P55318 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
FOXA3P55318 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC13.83□□□□□ -0.2
FOXA3P55318 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
FOXA3P55318 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA3P55318 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA3P55318 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC13.83□□□□□ -0.2
FOXA3P55318 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC13.83□□□□□ -0.2
FOXA3P55318 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA3P55318 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA3P55318 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA3P55318 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC13.83□□□□□ -0.2
FOXA3P55318 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA3P55318 AC124283.5-201ENST00000624661 1809 ntBASIC13.83□□□□□ -0.2
FOXA3P55318 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA3P55318 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA3P55318 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA3P55318 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
FOXA3P55318 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA3P55318 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA3P55318 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA3P55318 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA3P55318 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA3P55318 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA3P55318 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC13.82□□□□□ -0.2
FOXA3P55318 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA3P55318 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC13.82□□□□□ -0.2
FOXA3P55318 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
FOXA3P55318 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA3P55318 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA3P55318 RER1-204ENST00000378518 522 ntTSL 3 BASIC13.82□□□□□ -0.2
FOXA3P55318 TUBB8P6-201ENST00000436895 1288 ntBASIC13.82□□□□□ -0.2
FOXA3P55318 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC13.82□□□□□ -0.2
FOXA3P55318 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC13.82□□□□□ -0.2
FOXA3P55318 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC13.82□□□□□ -0.2
FOXA3P55318 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC13.82□□□□□ -0.2
FOXA3P55318 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA3P55318 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA3P55318 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC13.82□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 12.3 ms