Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC18.99■□□□□ 0.63
NEK3P51956 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC18.99■□□□□ 0.63
NEK3P51956 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
NEK3P51956 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
NEK3P51956 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
NEK3P51956 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
NEK3P51956 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
NEK3P51956 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
NEK3P51956 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
NEK3P51956 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
NEK3P51956 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.99■□□□□ 0.63
NEK3P51956 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC18.98■□□□□ 0.63
NEK3P51956 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC18.98■□□□□ 0.63
NEK3P51956 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
NEK3P51956 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
NEK3P51956 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
NEK3P51956 AP000997.3-201ENST00000623333 2250 ntBASIC18.98■□□□□ 0.63
NEK3P51956 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC18.98■□□□□ 0.63
NEK3P51956 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
NEK3P51956 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC18.98■□□□□ 0.63
NEK3P51956 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC18.98■□□□□ 0.63
NEK3P51956 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
NEK3P51956 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC18.98■□□□□ 0.63
NEK3P51956 AC140113.3-201ENST00000605663 199 ntBASIC18.98■□□□□ 0.63
NEK3P51956 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
NEK3P51956 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
NEK3P51956 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
NEK3P51956 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
NEK3P51956 KRT8P3-201ENST00000519669 1449 ntBASIC18.98■□□□□ 0.63
NEK3P51956 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
NEK3P51956 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC18.98■□□□□ 0.63
NEK3P51956 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
NEK3P51956 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC18.98■□□□□ 0.63
NEK3P51956 ABALON-201ENST00000629058 1903 ntBASIC18.98■□□□□ 0.63
NEK3P51956 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
NEK3P51956 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
NEK3P51956 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.97■□□□□ 0.63
NEK3P51956 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
NEK3P51956 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC18.97■□□□□ 0.63
NEK3P51956 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
NEK3P51956 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
NEK3P51956 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
NEK3P51956 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
NEK3P51956 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC18.97■□□□□ 0.63
NEK3P51956 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
NEK3P51956 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
NEK3P51956 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
NEK3P51956 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
NEK3P51956 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
NEK3P51956 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
NEK3P51956 TSPY5P-201ENST00000426936 936 ntBASIC18.97■□□□□ 0.63
NEK3P51956 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
NEK3P51956 AC009947.2-201ENST00000444014 672 ntBASIC18.97■□□□□ 0.63
NEK3P51956 AC092647.4-201ENST00000457211 535 ntBASIC18.97■□□□□ 0.63
NEK3P51956 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
NEK3P51956 AC011558.1-201ENST00000623459 338 ntBASIC18.97■□□□□ 0.63
NEK3P51956 AL023973.1-201ENST00000624619 620 ntBASIC18.97■□□□□ 0.63
NEK3P51956 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
NEK3P51956 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
NEK3P51956 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
NEK3P51956 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
NEK3P51956 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
NEK3P51956 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC18.97■□□□□ 0.63
NEK3P51956 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
NEK3P51956 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
NEK3P51956 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
NEK3P51956 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC18.97■□□□□ 0.63
NEK3P51956 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
NEK3P51956 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
NEK3P51956 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
NEK3P51956 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC18.97■□□□□ 0.63
NEK3P51956 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
NEK3P51956 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
NEK3P51956 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.97■□□□□ 0.63
NEK3P51956 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.97■□□□□ 0.63
NEK3P51956 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC18.97■□□□□ 0.63
NEK3P51956 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
NEK3P51956 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
NEK3P51956 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC18.97■□□□□ 0.63
NEK3P51956 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
NEK3P51956 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
NEK3P51956 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC18.96■□□□□ 0.63
NEK3P51956 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.96■□□□□ 0.63
NEK3P51956 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
NEK3P51956 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.96■□□□□ 0.63
NEK3P51956 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
NEK3P51956 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
NEK3P51956 GPAT2P1-201ENST00000444924 1672 ntBASIC18.96■□□□□ 0.63
NEK3P51956 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC18.96■□□□□ 0.63
NEK3P51956 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
NEK3P51956 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
NEK3P51956 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
NEK3P51956 Telomerase-vert.1-201ENST00000363312 438 ntBASIC18.96■□□□□ 0.63
NEK3P51956 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
NEK3P51956 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC18.96■□□□□ 0.63
NEK3P51956 AC087388.1-201ENST00000571370 1112 ntBASIC18.96■□□□□ 0.63
NEK3P51956 NEK4P2-201ENST00000580004 1012 ntBASIC18.96■□□□□ 0.63
NEK3P51956 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
NEK3P51956 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC18.96■□□□□ 0.63
NEK3P51956 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms