Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
CUX1P39880 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
CUX1P39880 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC30.75■■■□□ 2.51
CUX1P39880 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC30.75■■■□□ 2.51
CUX1P39880 IMP4-203ENST00000409935 958 ntTSL 5 BASIC30.75■■■□□ 2.51
CUX1P39880 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
CUX1P39880 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC30.75■■■□□ 2.51
CUX1P39880 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC30.75■■■□□ 2.51
CUX1P39880 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC30.75■■■□□ 2.51
CUX1P39880 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC30.75■■■□□ 2.51
CUX1P39880 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
CUX1P39880 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC30.75■■■□□ 2.51
CUX1P39880 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC30.74■■■□□ 2.51
CUX1P39880 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
CUX1P39880 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
CUX1P39880 FIS1-203ENST00000442303 631 ntTSL 3 BASIC30.74■■■□□ 2.51
CUX1P39880 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC30.74■■■□□ 2.51
CUX1P39880 AP001160.2-201ENST00000596071 487 ntBASIC30.74■■■□□ 2.51
CUX1P39880 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC30.74■■■□□ 2.51
CUX1P39880 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
CUX1P39880 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC30.74■■■□□ 2.51
CUX1P39880 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
CUX1P39880 AP002414.3-201ENST00000589352 1468 ntBASIC30.74■■■□□ 2.51
CUX1P39880 SNAI3-AS1-205ENST00000568633 2096 ntBASIC30.74■■■□□ 2.51
CUX1P39880 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
CUX1P39880 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
CUX1P39880 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
CUX1P39880 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
CUX1P39880 PMS2P2-201ENST00000425039 1128 ntBASIC30.73■■■□□ 2.51
CUX1P39880 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC30.73■■■□□ 2.51
CUX1P39880 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC30.73■■■□□ 2.51
CUX1P39880 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
CUX1P39880 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
CUX1P39880 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
CUX1P39880 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
CUX1P39880 ME2-218ENST00000640965 2476 ntTSL 5 BASIC30.73■■■□□ 2.51
CUX1P39880 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
CUX1P39880 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
CUX1P39880 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC30.73■■■□□ 2.51
CUX1P39880 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
CUX1P39880 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
CUX1P39880 AL356309.3-201ENST00000624132 1934 ntBASIC30.73■■■□□ 2.51
CUX1P39880 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC30.73■■■□□ 2.51
CUX1P39880 HLA-J-201ENST00000462773 1622 ntBASIC30.73■■■□□ 2.51
CUX1P39880 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC30.73■■■□□ 2.51
CUX1P39880 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
CUX1P39880 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
CUX1P39880 FUOM-202ENST00000368551 628 ntTSL 3 BASIC30.73■■■□□ 2.51
CUX1P39880 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC30.73■■■□□ 2.51
CUX1P39880 CENPM-204ENST00000402420 688 ntTSL 5 BASIC30.73■■■□□ 2.51
CUX1P39880 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC30.73■■■□□ 2.51
CUX1P39880 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC30.72■■■□□ 2.51
CUX1P39880 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC30.72■■■□□ 2.51
CUX1P39880 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC30.72■■■□□ 2.51
CUX1P39880 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC30.72■■■□□ 2.51
CUX1P39880 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC30.72■■■□□ 2.51
CUX1P39880 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC30.72■■■□□ 2.51
CUX1P39880 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC30.72■■■□□ 2.51
CUX1P39880 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC30.72■■■□□ 2.51
CUX1P39880 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
CUX1P39880 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
CUX1P39880 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC30.71■■■□□ 2.51
CUX1P39880 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
CUX1P39880 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC30.71■■■□□ 2.51
CUX1P39880 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC30.71■■■□□ 2.51
CUX1P39880 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC30.71■■■□□ 2.51
CUX1P39880 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC30.71■■■□□ 2.51
CUX1P39880 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
CUX1P39880 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC30.71■■■□□ 2.51
CUX1P39880 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
CUX1P39880 URGCP-206ENST00000446958 365 ntTSL 2 BASIC30.71■■■□□ 2.51
CUX1P39880 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC30.71■■■□□ 2.51
CUX1P39880 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC30.71■■■□□ 2.51
CUX1P39880 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
CUX1P39880 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC30.71■■■□□ 2.51
CUX1P39880 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC30.71■■■□□ 2.51
CUX1P39880 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
CUX1P39880 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC30.7■■■□□ 2.51
CUX1P39880 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC30.7■■■□□ 2.51
CUX1P39880 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC30.7■■■□□ 2.51
CUX1P39880 KIRREL3-AS3-201ENST00000404882 831 ntBASIC30.7■■■□□ 2.51
CUX1P39880 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC30.7■■■□□ 2.51
CUX1P39880 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC30.7■■■□□ 2.51
CUX1P39880 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC30.7■■■□□ 2.51
CUX1P39880 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
CUX1P39880 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC30.7■■■□□ 2.51
CUX1P39880 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
CUX1P39880 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC30.7■■■□□ 2.51
CUX1P39880 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC30.7■■■□□ 2.51
CUX1P39880 AL032819.2-201ENST00000624543 2162 ntBASIC30.7■■■□□ 2.51
CUX1P39880 AC107918.4-202ENST00000641623 219 ntBASIC30.7■■■□□ 2.51
CUX1P39880 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
CUX1P39880 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
CUX1P39880 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC30.69■■■□□ 2.5
CUX1P39880 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
CUX1P39880 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
CUX1P39880 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
CUX1P39880 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
CUX1P39880 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC30.69■■■□□ 2.5
CUX1P39880 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC30.69■■■□□ 2.5
Retrieved 100 of 98,524 protein–RNA pairs in 56.8 ms