Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC19.06■□□□□ 0.64
HMGA1P17096 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HMGA1P17096 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HMGA1P17096 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC19.06■□□□□ 0.64
HMGA1P17096 SNCG-201ENST00000348795 684 ntTSL 2 BASIC19.06■□□□□ 0.64
HMGA1P17096 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC19.06■□□□□ 0.64
HMGA1P17096 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
HMGA1P17096 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HMGA1P17096 FICD-205ENST00000552758 603 ntTSL 2 BASIC19.06■□□□□ 0.64
HMGA1P17096 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC19.06■□□□□ 0.64
HMGA1P17096 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC19.06■□□□□ 0.64
HMGA1P17096 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HMGA1P17096 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HMGA1P17096 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HMGA1P17096 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
HMGA1P17096 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HMGA1P17096 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HMGA1P17096 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HMGA1P17096 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HMGA1P17096 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
HMGA1P17096 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
HMGA1P17096 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HMGA1P17096 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC19.05■□□□□ 0.64
HMGA1P17096 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC19.05■□□□□ 0.64
HMGA1P17096 VENTXP7-201ENST00000475503 772 ntBASIC19.05■□□□□ 0.64
HMGA1P17096 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC19.05■□□□□ 0.64
HMGA1P17096 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC19.05■□□□□ 0.64
HMGA1P17096 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC19.05■□□□□ 0.64
HMGA1P17096 CCNC-219ENST00000627680 896 ntTSL 5 BASIC19.05■□□□□ 0.64
HMGA1P17096 ANKRD20A8P-203ENST00000641373 517 ntBASIC19.05■□□□□ 0.64
HMGA1P17096 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HMGA1P17096 AL031598.1-201ENST00000561511 1773 ntBASIC19.05■□□□□ 0.64
HMGA1P17096 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
HMGA1P17096 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC19.05■□□□□ 0.64
HMGA1P17096 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
HMGA1P17096 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC19.05■□□□□ 0.64
HMGA1P17096 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HMGA1P17096 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
HMGA1P17096 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
HMGA1P17096 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
HMGA1P17096 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC19.04■□□□□ 0.64
HMGA1P17096 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
HMGA1P17096 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HMGA1P17096 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
HMGA1P17096 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HMGA1P17096 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HMGA1P17096 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC19.04■□□□□ 0.64
HMGA1P17096 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
HMGA1P17096 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
HMGA1P17096 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
HMGA1P17096 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC19.04■□□□□ 0.64
HMGA1P17096 FDX1P1-201ENST00000449115 551 ntBASIC19.04■□□□□ 0.64
HMGA1P17096 AC068472.1-201ENST00000474589 881 ntBASIC19.04■□□□□ 0.64
HMGA1P17096 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
HMGA1P17096 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC19.04■□□□□ 0.64
HMGA1P17096 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC19.04■□□□□ 0.64
HMGA1P17096 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HMGA1P17096 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
HMGA1P17096 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC19.04■□□□□ 0.64
HMGA1P17096 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC19.04■□□□□ 0.64
HMGA1P17096 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.04■□□□□ 0.64
HMGA1P17096 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC19.04■□□□□ 0.64
HMGA1P17096 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC19.03■□□□□ 0.64
HMGA1P17096 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HMGA1P17096 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HMGA1P17096 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HMGA1P17096 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HMGA1P17096 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
HMGA1P17096 TSPY12P-201ENST00000421279 868 ntBASIC19.03■□□□□ 0.64
HMGA1P17096 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC19.03■□□□□ 0.64
HMGA1P17096 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC19.03■□□□□ 0.64
HMGA1P17096 AC104692.2-201ENST00000603054 253 ntBASIC19.03■□□□□ 0.64
HMGA1P17096 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HMGA1P17096 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HMGA1P17096 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HMGA1P17096 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC19.03■□□□□ 0.64
HMGA1P17096 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HMGA1P17096 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
HMGA1P17096 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
HMGA1P17096 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
HMGA1P17096 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC19.02■□□□□ 0.64
HMGA1P17096 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC19.02■□□□□ 0.64
HMGA1P17096 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
HMGA1P17096 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
HMGA1P17096 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC19.02■□□□□ 0.64
HMGA1P17096 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
HMGA1P17096 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HMGA1P17096 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HMGA1P17096 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
HMGA1P17096 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
HMGA1P17096 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
HMGA1P17096 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
HMGA1P17096 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HMGA1P17096 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC19.02■□□□□ 0.64
HMGA1P17096 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC19.02■□□□□ 0.64
HMGA1P17096 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC19.02■□□□□ 0.64
HMGA1P17096 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC19.02■□□□□ 0.64
HMGA1P17096 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC19.02■□□□□ 0.64
HMGA1P17096 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC19.02■□□□□ 0.64
HMGA1P17096 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC19.02■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms