Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC15.42■□□□□ 0.06
ABCA1O95477 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
ABCA1O95477 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC15.42■□□□□ 0.06
ABCA1O95477 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC15.42■□□□□ 0.06
ABCA1O95477 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC15.42■□□□□ 0.06
ABCA1O95477 REXO1L6P-202ENST00000619970 1078 ntBASIC15.42■□□□□ 0.06
ABCA1O95477 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
ABCA1O95477 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC15.42■□□□□ 0.06
ABCA1O95477 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
ABCA1O95477 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
ABCA1O95477 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
ABCA1O95477 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
ABCA1O95477 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
ABCA1O95477 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC15.41■□□□□ 0.06
ABCA1O95477 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
ABCA1O95477 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
ABCA1O95477 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC15.41■□□□□ 0.06
ABCA1O95477 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
ABCA1O95477 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC15.41■□□□□ 0.06
ABCA1O95477 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
ABCA1O95477 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
ABCA1O95477 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
ABCA1O95477 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
ABCA1O95477 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
ABCA1O95477 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
ABCA1O95477 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC15.41■□□□□ 0.06
ABCA1O95477 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC15.41■□□□□ 0.06
ABCA1O95477 MCCD1P1-208ENST00000445732 328 ntBASIC15.41■□□□□ 0.06
ABCA1O95477 FOSL1P1-201ENST00000511041 816 ntBASIC15.41■□□□□ 0.06
ABCA1O95477 KRT18P58-201ENST00000527480 1120 ntBASIC15.41■□□□□ 0.06
ABCA1O95477 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC15.41■□□□□ 0.06
ABCA1O95477 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC15.41■□□□□ 0.06
ABCA1O95477 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC15.41■□□□□ 0.06
ABCA1O95477 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
ABCA1O95477 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
ABCA1O95477 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
ABCA1O95477 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
ABCA1O95477 Z82202.1-201ENST00000623446 1880 ntBASIC15.41■□□□□ 0.06
ABCA1O95477 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
ABCA1O95477 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
ABCA1O95477 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
ABCA1O95477 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC15.41■□□□□ 0.06
ABCA1O95477 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
ABCA1O95477 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC15.41■□□□□ 0.06
ABCA1O95477 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
ABCA1O95477 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC15.41■□□□□ 0.06
ABCA1O95477 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
ABCA1O95477 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
ABCA1O95477 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
ABCA1O95477 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC15.41■□□□□ 0.06
ABCA1O95477 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC15.41■□□□□ 0.06
ABCA1O95477 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
ABCA1O95477 PMS2P1-201ENST00000431037 1228 ntBASIC15.41■□□□□ 0.06
ABCA1O95477 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC15.41■□□□□ 0.06
ABCA1O95477 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
ABCA1O95477 ABR-204ENST00000543210 1049 ntTSL 2 BASIC15.41■□□□□ 0.06
ABCA1O95477 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC15.41■□□□□ 0.06
ABCA1O95477 AL353801.3-201ENST00000609898 542 ntBASIC15.41■□□□□ 0.06
ABCA1O95477 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
ABCA1O95477 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
ABCA1O95477 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
ABCA1O95477 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC15.4■□□□□ 0.06
ABCA1O95477 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC15.4■□□□□ 0.06
ABCA1O95477 UBC-206ENST00000538617 1303 ntTSL 5 BASIC15.4■□□□□ 0.06
ABCA1O95477 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ABCA1O95477 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ABCA1O95477 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
ABCA1O95477 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC15.4■□□□□ 0.06
ABCA1O95477 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ABCA1O95477 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC15.4■□□□□ 0.06
ABCA1O95477 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
ABCA1O95477 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC15.4■□□□□ 0.06
ABCA1O95477 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC15.4■□□□□ 0.06
ABCA1O95477 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC15.4■□□□□ 0.06
ABCA1O95477 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ABCA1O95477 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC15.4■□□□□ 0.06
ABCA1O95477 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ABCA1O95477 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC15.4■□□□□ 0.06
ABCA1O95477 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ABCA1O95477 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
ABCA1O95477 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ABCA1O95477 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC15.4■□□□□ 0.06
ABCA1O95477 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ABCA1O95477 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC15.4■□□□□ 0.06
ABCA1O95477 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
ABCA1O95477 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ABCA1O95477 GRAMD4P1-201ENST00000435181 1110 ntBASIC15.4■□□□□ 0.06
ABCA1O95477 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC15.4■□□□□ 0.06
ABCA1O95477 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
ABCA1O95477 VPS51-217ENST00000639871 243 ntTSL 5 BASIC15.4■□□□□ 0.06
ABCA1O95477 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ABCA1O95477 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.06
ABCA1O95477 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC15.39■□□□□ 0.05
ABCA1O95477 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC15.39■□□□□ 0.05
ABCA1O95477 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
ABCA1O95477 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
ABCA1O95477 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
ABCA1O95477 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
ABCA1O95477 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
ABCA1O95477 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms