Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM49D1C9J1S8 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.49■□□□□ 0.55
TRIM49D1C9J1S8 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM49D1C9J1S8 FLJ13224-201ENST00000313737 1514 ntBASIC18.49■□□□□ 0.55
TRIM49D1C9J1S8 KRT16P1-201ENST00000399124 1418 ntBASIC18.49■□□□□ 0.55
TRIM49D1C9J1S8 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
TRIM49D1C9J1S8 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
TRIM49D1C9J1S8 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM49D1C9J1S8 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM49D1C9J1S8 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM49D1C9J1S8 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC18.48■□□□□ 0.55
TRIM49D1C9J1S8 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM49D1C9J1S8 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM49D1C9J1S8 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM49D1C9J1S8 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC18.48■□□□□ 0.55
TRIM49D1C9J1S8 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC18.48■□□□□ 0.55
TRIM49D1C9J1S8 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC18.48■□□□□ 0.55
TRIM49D1C9J1S8 CABP2-204ENST00000636477 941 ntTSL 5 BASIC18.48■□□□□ 0.55
TRIM49D1C9J1S8 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC18.48■□□□□ 0.55
TRIM49D1C9J1S8 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC18.48■□□□□ 0.55
TRIM49D1C9J1S8 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18.48■□□□□ 0.55
TRIM49D1C9J1S8 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC18.48■□□□□ 0.55
TRIM49D1C9J1S8 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM49D1C9J1S8 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM49D1C9J1S8 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM49D1C9J1S8 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM49D1C9J1S8 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM49D1C9J1S8 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM49D1C9J1S8 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM49D1C9J1S8 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC18.48■□□□□ 0.55
TRIM49D1C9J1S8 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM49D1C9J1S8 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM49D1C9J1S8 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM49D1C9J1S8 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC18.47■□□□□ 0.55
TRIM49D1C9J1S8 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC18.47■□□□□ 0.55
TRIM49D1C9J1S8 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC18.47■□□□□ 0.55
TRIM49D1C9J1S8 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM49D1C9J1S8 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.47■□□□□ 0.55
TRIM49D1C9J1S8 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM49D1C9J1S8 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM49D1C9J1S8 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM49D1C9J1S8 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM49D1C9J1S8 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM49D1C9J1S8 ESRRAP1-201ENST00000400596 1257 ntBASIC18.47■□□□□ 0.55
TRIM49D1C9J1S8 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM49D1C9J1S8 FDX2-207ENST00000494368 584 ntTSL 4 BASIC18.47■□□□□ 0.55
TRIM49D1C9J1S8 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC18.47■□□□□ 0.55
TRIM49D1C9J1S8 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC18.47■□□□□ 0.55
TRIM49D1C9J1S8 AC092666.2-201ENST00000613287 246 ntBASIC18.47■□□□□ 0.55
TRIM49D1C9J1S8 AC008622.2-201ENST00000617006 1229 ntBASIC18.47■□□□□ 0.55
TRIM49D1C9J1S8 CR392000.1-201ENST00000624770 1228 ntBASIC18.47■□□□□ 0.55
TRIM49D1C9J1S8 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC18.47■□□□□ 0.55
TRIM49D1C9J1S8 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC18.47■□□□□ 0.55
TRIM49D1C9J1S8 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM49D1C9J1S8 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM49D1C9J1S8 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM49D1C9J1S8 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM49D1C9J1S8 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM49D1C9J1S8 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM49D1C9J1S8 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM49D1C9J1S8 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
TRIM49D1C9J1S8 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC18.46■□□□□ 0.55
TRIM49D1C9J1S8 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
TRIM49D1C9J1S8 AL096828.2-201ENST00000567259 1965 ntBASIC18.46■□□□□ 0.55
TRIM49D1C9J1S8 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM49D1C9J1S8 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM49D1C9J1S8 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM49D1C9J1S8 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM49D1C9J1S8 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM49D1C9J1S8 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM49D1C9J1S8 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM49D1C9J1S8 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM49D1C9J1S8 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM49D1C9J1S8 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC18.46■□□□□ 0.55
TRIM49D1C9J1S8 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
TRIM49D1C9J1S8 FAM207BP-201ENST00000447172 505 ntBASIC18.46■□□□□ 0.55
TRIM49D1C9J1S8 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
TRIM49D1C9J1S8 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC18.46■□□□□ 0.55
TRIM49D1C9J1S8 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC18.46■□□□□ 0.55
TRIM49D1C9J1S8 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM49D1C9J1S8 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC18.46■□□□□ 0.55
TRIM49D1C9J1S8 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM49D1C9J1S8 AC130371.2-201ENST00000619443 611 ntBASIC18.46■□□□□ 0.55
TRIM49D1C9J1S8 AL031985.4-201ENST00000642138 673 ntBASIC18.46■□□□□ 0.55
TRIM49D1C9J1S8 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
TRIM49D1C9J1S8 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC18.46■□□□□ 0.55
TRIM49D1C9J1S8 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC18.46■□□□□ 0.55
TRIM49D1C9J1S8 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM49D1C9J1S8 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM49D1C9J1S8 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM49D1C9J1S8 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.55
TRIM49D1C9J1S8 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.46■□□□□ 0.55
TRIM49D1C9J1S8 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
TRIM49D1C9J1S8 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM49D1C9J1S8 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
TRIM49D1C9J1S8 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM49D1C9J1S8 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM49D1C9J1S8 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM49D1C9J1S8 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
TRIM49D1C9J1S8 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms