Protein–RNA interactions for Protein: Q9Y6Z2

LINC01558, Uncharacterized protein encoded by LINC01558, humanhuman

Predictions only

Length 57 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01558Q9Y6Z2 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC13.11□□□□□ -0.31
LINC01558Q9Y6Z2 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
LINC01558Q9Y6Z2 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
LINC01558Q9Y6Z2 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
LINC01558Q9Y6Z2 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
LINC01558Q9Y6Z2 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
LINC01558Q9Y6Z2 AL135925.1-201ENST00000605920 1701 ntBASIC13.1□□□□□ -0.31
LINC01558Q9Y6Z2 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
LINC01558Q9Y6Z2 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC01558Q9Y6Z2 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC01558Q9Y6Z2 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC01558Q9Y6Z2 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC01558Q9Y6Z2 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
LINC01558Q9Y6Z2 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
LINC01558Q9Y6Z2 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
LINC01558Q9Y6Z2 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
LINC01558Q9Y6Z2 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC13.09□□□□□ -0.31
LINC01558Q9Y6Z2 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
LINC01558Q9Y6Z2 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
LINC01558Q9Y6Z2 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC13.09□□□□□ -0.31
LINC01558Q9Y6Z2 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC13.09□□□□□ -0.31
LINC01558Q9Y6Z2 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC13.09□□□□□ -0.31
LINC01558Q9Y6Z2 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC13.09□□□□□ -0.31
LINC01558Q9Y6Z2 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
LINC01558Q9Y6Z2 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC13.09□□□□□ -0.31
LINC01558Q9Y6Z2 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC13.09□□□□□ -0.31
LINC01558Q9Y6Z2 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
LINC01558Q9Y6Z2 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
LINC01558Q9Y6Z2 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.31
LINC01558Q9Y6Z2 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
LINC01558Q9Y6Z2 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
LINC01558Q9Y6Z2 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC13.08□□□□□ -0.32
LINC01558Q9Y6Z2 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
LINC01558Q9Y6Z2 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
LINC01558Q9Y6Z2 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
LINC01558Q9Y6Z2 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
LINC01558Q9Y6Z2 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
LINC01558Q9Y6Z2 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
LINC01558Q9Y6Z2 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
LINC01558Q9Y6Z2 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
LINC01558Q9Y6Z2 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
LINC01558Q9Y6Z2 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
LINC01558Q9Y6Z2 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC13.07□□□□□ -0.32
LINC01558Q9Y6Z2 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
LINC01558Q9Y6Z2 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC13.07□□□□□ -0.32
LINC01558Q9Y6Z2 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
LINC01558Q9Y6Z2 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC13.07□□□□□ -0.32
LINC01558Q9Y6Z2 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
LINC01558Q9Y6Z2 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
LINC01558Q9Y6Z2 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
LINC01558Q9Y6Z2 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
LINC01558Q9Y6Z2 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
LINC01558Q9Y6Z2 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC13.06□□□□□ -0.32
LINC01558Q9Y6Z2 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC13.06□□□□□ -0.32
LINC01558Q9Y6Z2 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
LINC01558Q9Y6Z2 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
LINC01558Q9Y6Z2 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
LINC01558Q9Y6Z2 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
LINC01558Q9Y6Z2 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC13.05□□□□□ -0.32
LINC01558Q9Y6Z2 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
LINC01558Q9Y6Z2 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
LINC01558Q9Y6Z2 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
LINC01558Q9Y6Z2 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
LINC01558Q9Y6Z2 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC13.05□□□□□ -0.32
LINC01558Q9Y6Z2 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC13.05□□□□□ -0.32
LINC01558Q9Y6Z2 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
LINC01558Q9Y6Z2 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC13.05□□□□□ -0.32
LINC01558Q9Y6Z2 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
LINC01558Q9Y6Z2 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC13.04□□□□□ -0.32
LINC01558Q9Y6Z2 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
LINC01558Q9Y6Z2 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC13.04□□□□□ -0.32
LINC01558Q9Y6Z2 ERN1-208ENST00000606895 2068 ntBASIC13.04□□□□□ -0.32
LINC01558Q9Y6Z2 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
LINC01558Q9Y6Z2 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
LINC01558Q9Y6Z2 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
LINC01558Q9Y6Z2 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
LINC01558Q9Y6Z2 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
LINC01558Q9Y6Z2 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
LINC01558Q9Y6Z2 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
LINC01558Q9Y6Z2 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
LINC01558Q9Y6Z2 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
LINC01558Q9Y6Z2 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
LINC01558Q9Y6Z2 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
LINC01558Q9Y6Z2 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
LINC01558Q9Y6Z2 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
LINC01558Q9Y6Z2 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
LINC01558Q9Y6Z2 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
LINC01558Q9Y6Z2 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
LINC01558Q9Y6Z2 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC01558Q9Y6Z2 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC01558Q9Y6Z2 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC13.01□□□□□ -0.33
LINC01558Q9Y6Z2 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
LINC01558Q9Y6Z2 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC13.01□□□□□ -0.33
LINC01558Q9Y6Z2 CEBPA-AS1-201ENST00000592982 2198 ntBASIC13.01□□□□□ -0.33
LINC01558Q9Y6Z2 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC13.01□□□□□ -0.33
LINC01558Q9Y6Z2 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
LINC01558Q9Y6Z2 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
LINC01558Q9Y6Z2 DUSP8P4-201ENST00000399538 1761 ntBASIC13□□□□□ -0.33
LINC01558Q9Y6Z2 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
LINC01558Q9Y6Z2 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms