Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC24.99■■□□□ 1.59
TM9SF3Q9HD45 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC24.98■■□□□ 1.59
TM9SF3Q9HD45 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC24.98■■□□□ 1.59
TM9SF3Q9HD45 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC24.98■■□□□ 1.59
TM9SF3Q9HD45 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
TM9SF3Q9HD45 AC100797.4-201ENST00000631653 1827 ntBASIC24.98■■□□□ 1.59
TM9SF3Q9HD45 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
TM9SF3Q9HD45 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
TM9SF3Q9HD45 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
TM9SF3Q9HD45 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
TM9SF3Q9HD45 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
TM9SF3Q9HD45 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC24.96■■□□□ 1.59
TM9SF3Q9HD45 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC24.95■■□□□ 1.59
TM9SF3Q9HD45 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC24.95■■□□□ 1.58
TM9SF3Q9HD45 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC24.94■■□□□ 1.58
TM9SF3Q9HD45 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
TM9SF3Q9HD45 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC24.94■■□□□ 1.58
TM9SF3Q9HD45 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
TM9SF3Q9HD45 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
TM9SF3Q9HD45 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
TM9SF3Q9HD45 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC24.93■■□□□ 1.58
TM9SF3Q9HD45 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC24.93■■□□□ 1.58
TM9SF3Q9HD45 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
TM9SF3Q9HD45 GUK1-208ENST00000366728 842 ntTSL 2 BASIC24.93■■□□□ 1.58
TM9SF3Q9HD45 AC007029.1-201ENST00000604183 313 ntBASIC24.93■■□□□ 1.58
TM9SF3Q9HD45 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC24.93■■□□□ 1.58
TM9SF3Q9HD45 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
TM9SF3Q9HD45 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
TM9SF3Q9HD45 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
TM9SF3Q9HD45 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
TM9SF3Q9HD45 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC24.92■■□□□ 1.58
TM9SF3Q9HD45 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
TM9SF3Q9HD45 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
TM9SF3Q9HD45 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC24.92■■□□□ 1.58
TM9SF3Q9HD45 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC24.92■■□□□ 1.58
TM9SF3Q9HD45 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC24.92■■□□□ 1.58
TM9SF3Q9HD45 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC24.92■■□□□ 1.58
TM9SF3Q9HD45 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC24.92■■□□□ 1.58
TM9SF3Q9HD45 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC24.91■■□□□ 1.58
TM9SF3Q9HD45 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC24.9■■□□□ 1.58
TM9SF3Q9HD45 REST-210ENST00000638187 1334 ntTSL 5 BASIC24.9■■□□□ 1.58
TM9SF3Q9HD45 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC24.9■■□□□ 1.58
TM9SF3Q9HD45 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC24.9■■□□□ 1.58
TM9SF3Q9HD45 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
TM9SF3Q9HD45 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
TM9SF3Q9HD45 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC24.9■■□□□ 1.58
TM9SF3Q9HD45 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC24.9■■□□□ 1.58
TM9SF3Q9HD45 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC24.9■■□□□ 1.58
TM9SF3Q9HD45 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC24.9■■□□□ 1.58
TM9SF3Q9HD45 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
TM9SF3Q9HD45 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC24.89■■□□□ 1.58
TM9SF3Q9HD45 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
TM9SF3Q9HD45 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
TM9SF3Q9HD45 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC24.89■■□□□ 1.58
TM9SF3Q9HD45 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
TM9SF3Q9HD45 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC24.88■■□□□ 1.57
TM9SF3Q9HD45 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC24.88■■□□□ 1.57
TM9SF3Q9HD45 AL359258.2-201ENST00000564063 1566 ntBASIC24.88■■□□□ 1.57
TM9SF3Q9HD45 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC24.87■■□□□ 1.57
TM9SF3Q9HD45 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC24.87■■□□□ 1.57
TM9SF3Q9HD45 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC24.86■■□□□ 1.57
TM9SF3Q9HD45 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
TM9SF3Q9HD45 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC24.86■■□□□ 1.57
TM9SF3Q9HD45 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
TM9SF3Q9HD45 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC24.85■■□□□ 1.57
TM9SF3Q9HD45 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC24.85■■□□□ 1.57
TM9SF3Q9HD45 AC009831.1-201ENST00000580420 1582 ntBASIC24.84■■□□□ 1.57
TM9SF3Q9HD45 SMPD5-203ENST00000639008 1464 ntBASIC24.84■■□□□ 1.57
TM9SF3Q9HD45 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
TM9SF3Q9HD45 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
TM9SF3Q9HD45 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC24.84■■□□□ 1.57
TM9SF3Q9HD45 AC133552.2-201ENST00000619106 1032 ntBASIC24.84■■□□□ 1.57
TM9SF3Q9HD45 AC129492.7-201ENST00000622992 756 ntBASIC24.84■■□□□ 1.57
TM9SF3Q9HD45 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
TM9SF3Q9HD45 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC24.84■■□□□ 1.57
TM9SF3Q9HD45 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC24.84■■□□□ 1.57
TM9SF3Q9HD45 AL592293.1-201ENST00000502889 1188 ntBASIC24.83■■□□□ 1.57
TM9SF3Q9HD45 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
TM9SF3Q9HD45 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
TM9SF3Q9HD45 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC24.83■■□□□ 1.56
TM9SF3Q9HD45 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC24.83■■□□□ 1.56
TM9SF3Q9HD45 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC24.82■■□□□ 1.56
TM9SF3Q9HD45 RARRES2P1-201ENST00000474487 481 ntBASIC24.82■■□□□ 1.56
TM9SF3Q9HD45 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
TM9SF3Q9HD45 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC24.82■■□□□ 1.56
TM9SF3Q9HD45 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
TM9SF3Q9HD45 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
TM9SF3Q9HD45 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
TM9SF3Q9HD45 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
TM9SF3Q9HD45 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC24.81■■□□□ 1.56
TM9SF3Q9HD45 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
TM9SF3Q9HD45 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC24.8■■□□□ 1.56
TM9SF3Q9HD45 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC24.8■■□□□ 1.56
TM9SF3Q9HD45 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC24.8■■□□□ 1.56
TM9SF3Q9HD45 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC24.8■■□□□ 1.56
TM9SF3Q9HD45 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
TM9SF3Q9HD45 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC24.79■■□□□ 1.56
TM9SF3Q9HD45 DUX4L18-201ENST00000553347 1267 ntBASIC24.79■■□□□ 1.56
TM9SF3Q9HD45 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
TM9SF3Q9HD45 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC24.79■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms