Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 PROC-203ENST00000409048 1586 ntTSL 5 BASIC30.47■■■□□ 2.47
RPAP1Q9BWH6 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC30.47■■■□□ 2.47
RPAP1Q9BWH6 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
RPAP1Q9BWH6 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
RPAP1Q9BWH6 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
RPAP1Q9BWH6 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC30.46■■■□□ 2.47
RPAP1Q9BWH6 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
RPAP1Q9BWH6 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC30.46■■■□□ 2.47
RPAP1Q9BWH6 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
RPAP1Q9BWH6 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
RPAP1Q9BWH6 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC30.45■■■□□ 2.47
RPAP1Q9BWH6 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC30.45■■■□□ 2.47
RPAP1Q9BWH6 PEX7-203ENST00000541292 945 ntTSL 5 BASIC30.45■■■□□ 2.47
RPAP1Q9BWH6 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC30.45■■■□□ 2.46
RPAP1Q9BWH6 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC30.44■■■□□ 2.46
RPAP1Q9BWH6 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
RPAP1Q9BWH6 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
RPAP1Q9BWH6 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC30.43■■■□□ 2.46
RPAP1Q9BWH6 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC30.43■■■□□ 2.46
RPAP1Q9BWH6 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
RPAP1Q9BWH6 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC30.43■■■□□ 2.46
RPAP1Q9BWH6 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
RPAP1Q9BWH6 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
RPAP1Q9BWH6 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
RPAP1Q9BWH6 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
RPAP1Q9BWH6 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC30.42■■■□□ 2.46
RPAP1Q9BWH6 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC30.41■■■□□ 2.46
RPAP1Q9BWH6 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
RPAP1Q9BWH6 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
RPAP1Q9BWH6 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
RPAP1Q9BWH6 AC012354.3-201ENST00000623734 483 ntBASIC30.41■■■□□ 2.46
RPAP1Q9BWH6 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
RPAP1Q9BWH6 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
RPAP1Q9BWH6 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC30.39■■■□□ 2.46
RPAP1Q9BWH6 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC30.39■■■□□ 2.46
RPAP1Q9BWH6 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
RPAP1Q9BWH6 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC30.39■■■□□ 2.45
RPAP1Q9BWH6 MIR219A2-201ENST00000608502 1504 ntBASIC30.38■■■□□ 2.45
RPAP1Q9BWH6 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC30.38■■■□□ 2.45
RPAP1Q9BWH6 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
RPAP1Q9BWH6 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC30.38■■■□□ 2.45
RPAP1Q9BWH6 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
RPAP1Q9BWH6 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
RPAP1Q9BWH6 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
RPAP1Q9BWH6 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
RPAP1Q9BWH6 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
RPAP1Q9BWH6 AC092296.2-201ENST00000589470 999 ntBASIC30.36■■■□□ 2.45
RPAP1Q9BWH6 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC30.36■■■□□ 2.45
RPAP1Q9BWH6 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC30.35■■■□□ 2.45
RPAP1Q9BWH6 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
RPAP1Q9BWH6 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC30.34■■■□□ 2.45
RPAP1Q9BWH6 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC30.34■■■□□ 2.45
RPAP1Q9BWH6 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
RPAP1Q9BWH6 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
RPAP1Q9BWH6 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC30.33■■■□□ 2.45
RPAP1Q9BWH6 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
RPAP1Q9BWH6 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC30.33■■■□□ 2.45
RPAP1Q9BWH6 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
RPAP1Q9BWH6 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC30.32■■■□□ 2.44
RPAP1Q9BWH6 AP002414.2-202ENST00000590929 1450 ntBASIC30.31■■■□□ 2.44
RPAP1Q9BWH6 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
RPAP1Q9BWH6 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
RPAP1Q9BWH6 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC30.3■■■□□ 2.44
RPAP1Q9BWH6 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC30.3■■■□□ 2.44
RPAP1Q9BWH6 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
RPAP1Q9BWH6 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC30.29■■■□□ 2.44
RPAP1Q9BWH6 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
RPAP1Q9BWH6 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
RPAP1Q9BWH6 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC30.27■■■□□ 2.44
RPAP1Q9BWH6 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
RPAP1Q9BWH6 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
RPAP1Q9BWH6 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
RPAP1Q9BWH6 HYI-213ENST00000583037 1322 ntTSL 5 BASIC30.27■■■□□ 2.44
RPAP1Q9BWH6 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC30.27■■■□□ 2.44
RPAP1Q9BWH6 BX255925.1-201ENST00000566954 1854 ntBASIC30.26■■■□□ 2.43
RPAP1Q9BWH6 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
RPAP1Q9BWH6 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
RPAP1Q9BWH6 U85056.1-201ENST00000616429 682 ntBASIC30.26■■■□□ 2.43
RPAP1Q9BWH6 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC30.25■■■□□ 2.43
RPAP1Q9BWH6 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC30.25■■■□□ 2.43
RPAP1Q9BWH6 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC30.25■■■□□ 2.43
RPAP1Q9BWH6 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC30.25■■■□□ 2.43
RPAP1Q9BWH6 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
RPAP1Q9BWH6 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
RPAP1Q9BWH6 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
RPAP1Q9BWH6 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC30.24■■■□□ 2.43
RPAP1Q9BWH6 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC30.24■■■□□ 2.43
RPAP1Q9BWH6 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC30.24■■■□□ 2.43
RPAP1Q9BWH6 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
RPAP1Q9BWH6 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC30.23■■■□□ 2.43
RPAP1Q9BWH6 AC018358.1-201ENST00000631079 1402 ntBASIC30.23■■■□□ 2.43
RPAP1Q9BWH6 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC30.23■■■□□ 2.43
RPAP1Q9BWH6 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
RPAP1Q9BWH6 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
RPAP1Q9BWH6 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
RPAP1Q9BWH6 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC30.22■■■□□ 2.43
RPAP1Q9BWH6 LINC01003-201ENST00000564834 1764 ntBASIC30.21■■■□□ 2.43
RPAP1Q9BWH6 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC30.21■■■□□ 2.43
RPAP1Q9BWH6 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC30.21■■■□□ 2.43
RPAP1Q9BWH6 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC30.21■■■□□ 2.43
Retrieved 100 of 98,524 protein–RNA pairs in 12.5 ms