Protein–RNA interactions for Protein: Q9BT23

LIMD2, LIM domain-containing protein 2, humanhuman

Predictions only

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2Q9BT23 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LIMD2Q9BT23 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
LIMD2Q9BT23 BX255925.1-201ENST00000566954 1854 ntBASIC14.62□□□□□ -0.07
LIMD2Q9BT23 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC14.62□□□□□ -0.07
LIMD2Q9BT23 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
LIMD2Q9BT23 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
LIMD2Q9BT23 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LIMD2Q9BT23 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
LIMD2Q9BT23 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LIMD2Q9BT23 WHAMMP2-203ENST00000563942 1603 ntBASIC14.61□□□□□ -0.07
LIMD2Q9BT23 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
LIMD2Q9BT23 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
LIMD2Q9BT23 LTK-203ENST00000453182 2412 ntTSL 2 BASIC14.61□□□□□ -0.07
LIMD2Q9BT23 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
LIMD2Q9BT23 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC14.6□□□□□ -0.07
LIMD2Q9BT23 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC14.6□□□□□ -0.07
LIMD2Q9BT23 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LIMD2Q9BT23 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
LIMD2Q9BT23 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC14.6□□□□□ -0.07
LIMD2Q9BT23 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
LIMD2Q9BT23 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LIMD2Q9BT23 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
LIMD2Q9BT23 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LIMD2Q9BT23 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LIMD2Q9BT23 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
LIMD2Q9BT23 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC14.59□□□□□ -0.07
LIMD2Q9BT23 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
LIMD2Q9BT23 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC14.59□□□□□ -0.07
LIMD2Q9BT23 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC14.59□□□□□ -0.07
LIMD2Q9BT23 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LIMD2Q9BT23 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC14.58□□□□□ -0.07
LIMD2Q9BT23 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
LIMD2Q9BT23 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
LIMD2Q9BT23 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LIMD2Q9BT23 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC14.58□□□□□ -0.08
LIMD2Q9BT23 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LIMD2Q9BT23 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LIMD2Q9BT23 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
LIMD2Q9BT23 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
LIMD2Q9BT23 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LIMD2Q9BT23 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LIMD2Q9BT23 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC14.57□□□□□ -0.08
LIMD2Q9BT23 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC14.57□□□□□ -0.08
LIMD2Q9BT23 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC14.57□□□□□ -0.08
LIMD2Q9BT23 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC14.57□□□□□ -0.08
LIMD2Q9BT23 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC14.57□□□□□ -0.08
LIMD2Q9BT23 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
LIMD2Q9BT23 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
LIMD2Q9BT23 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LIMD2Q9BT23 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
LIMD2Q9BT23 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
LIMD2Q9BT23 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
LIMD2Q9BT23 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
LIMD2Q9BT23 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
LIMD2Q9BT23 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
LIMD2Q9BT23 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LIMD2Q9BT23 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LIMD2Q9BT23 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
LIMD2Q9BT23 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
LIMD2Q9BT23 AC018358.1-201ENST00000631079 1402 ntBASIC14.56□□□□□ -0.08
LIMD2Q9BT23 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LIMD2Q9BT23 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LIMD2Q9BT23 LINC01003-201ENST00000564834 1764 ntBASIC14.55□□□□□ -0.08
LIMD2Q9BT23 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
LIMD2Q9BT23 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LIMD2Q9BT23 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
LIMD2Q9BT23 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LIMD2Q9BT23 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC14.55□□□□□ -0.08
LIMD2Q9BT23 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LIMD2Q9BT23 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LIMD2Q9BT23 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC14.55□□□□□ -0.08
LIMD2Q9BT23 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LIMD2Q9BT23 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LIMD2Q9BT23 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LIMD2Q9BT23 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
LIMD2Q9BT23 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC14.54□□□□□ -0.08
LIMD2Q9BT23 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC14.54□□□□□ -0.08
LIMD2Q9BT23 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LIMD2Q9BT23 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC14.54□□□□□ -0.08
LIMD2Q9BT23 AC021231.2-201ENST00000594613 730 ntBASIC14.54□□□□□ -0.08
LIMD2Q9BT23 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LIMD2Q9BT23 SHF-208ENST00000560734 1731 ntTSL 3 BASIC14.54□□□□□ -0.08
LIMD2Q9BT23 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC14.54□□□□□ -0.08
LIMD2Q9BT23 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LIMD2Q9BT23 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC14.54□□□□□ -0.08
LIMD2Q9BT23 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
LIMD2Q9BT23 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC14.53□□□□□ -0.08
LIMD2Q9BT23 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
LIMD2Q9BT23 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIMD2Q9BT23 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIMD2Q9BT23 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIMD2Q9BT23 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC14.53□□□□□ -0.08
LIMD2Q9BT23 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIMD2Q9BT23 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
LIMD2Q9BT23 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
LIMD2Q9BT23 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC14.52□□□□□ -0.08
LIMD2Q9BT23 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
LIMD2Q9BT23 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
LIMD2Q9BT23 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
LIMD2Q9BT23 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 9.6 ms