Protein–RNA interactions for Protein: Q96L12

CALR3, Calreticulin-3, humanhuman

Known RBP Predictions only

Length 384 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CALR3Q96L12 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CALR3Q96L12 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC26.31■■□□□ 1.8
CALR3Q96L12 PEX7-203ENST00000541292 945 ntTSL 5 BASIC26.31■■□□□ 1.8
CALR3Q96L12 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC26.3■■□□□ 1.8
CALR3Q96L12 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC26.3■■□□□ 1.8
CALR3Q96L12 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
CALR3Q96L12 AC110285.7-201ENST00000624417 1536 ntBASIC26.29■■□□□ 1.8
CALR3Q96L12 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CALR3Q96L12 AC044849.2-201ENST00000606596 710 ntBASIC26.29■■□□□ 1.8
CALR3Q96L12 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC26.29■■□□□ 1.8
CALR3Q96L12 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
CALR3Q96L12 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CALR3Q96L12 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC26.27■■□□□ 1.8
CALR3Q96L12 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
CALR3Q96L12 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
CALR3Q96L12 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
CALR3Q96L12 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CALR3Q96L12 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CALR3Q96L12 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
CALR3Q96L12 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CALR3Q96L12 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC26.25■■□□□ 1.79
CALR3Q96L12 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC26.25■■□□□ 1.79
CALR3Q96L12 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC26.25■■□□□ 1.79
CALR3Q96L12 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
CALR3Q96L12 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC26.25■■□□□ 1.79
CALR3Q96L12 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC26.24■■□□□ 1.79
CALR3Q96L12 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC26.24■■□□□ 1.79
CALR3Q96L12 AP004609.3-201ENST00000610705 1884 ntBASIC26.24■■□□□ 1.79
CALR3Q96L12 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
CALR3Q96L12 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC26.23■■□□□ 1.79
CALR3Q96L12 NRG1-221ENST00000614767 762 ntTSL 5 BASIC26.23■■□□□ 1.79
CALR3Q96L12 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC26.23■■□□□ 1.79
CALR3Q96L12 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CALR3Q96L12 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
CALR3Q96L12 DUSP8P4-201ENST00000399538 1761 ntBASIC26.21■■□□□ 1.79
CALR3Q96L12 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC26.21■■□□□ 1.79
CALR3Q96L12 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC26.21■■□□□ 1.79
CALR3Q96L12 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC26.21■■□□□ 1.79
CALR3Q96L12 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
CALR3Q96L12 AC142472.1-201ENST00000612013 1741 ntBASIC26.2■■□□□ 1.79
CALR3Q96L12 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC26.2■■□□□ 1.78
CALR3Q96L12 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.78
CALR3Q96L12 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC26.2■■□□□ 1.78
CALR3Q96L12 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
CALR3Q96L12 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC26.19■■□□□ 1.78
CALR3Q96L12 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC26.19■■□□□ 1.78
CALR3Q96L12 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC26.19■■□□□ 1.78
CALR3Q96L12 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
CALR3Q96L12 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
CALR3Q96L12 BOD1-206ENST00000480951 814 ntTSL 2 BASIC26.19■■□□□ 1.78
CALR3Q96L12 WHAMMP3-201ENST00000611636 1609 ntBASIC26.18■■□□□ 1.78
CALR3Q96L12 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC26.18■■□□□ 1.78
CALR3Q96L12 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC26.18■■□□□ 1.78
CALR3Q96L12 AL162393.1-201ENST00000437852 946 ntBASIC26.18■■□□□ 1.78
CALR3Q96L12 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC26.18■■□□□ 1.78
CALR3Q96L12 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC26.18■■□□□ 1.78
CALR3Q96L12 AC092803.2-201ENST00000564287 1899 ntBASIC26.17■■□□□ 1.78
CALR3Q96L12 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
CALR3Q96L12 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
CALR3Q96L12 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
CALR3Q96L12 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
CALR3Q96L12 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC26.17■■□□□ 1.78
CALR3Q96L12 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
CALR3Q96L12 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC26.16■■□□□ 1.78
CALR3Q96L12 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC26.16■■□□□ 1.78
CALR3Q96L12 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
CALR3Q96L12 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC26.16■■□□□ 1.78
CALR3Q96L12 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
CALR3Q96L12 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC26.15■■□□□ 1.78
CALR3Q96L12 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
CALR3Q96L12 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
CALR3Q96L12 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC26.14■■□□□ 1.78
CALR3Q96L12 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC26.14■■□□□ 1.78
CALR3Q96L12 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
CALR3Q96L12 RPS2-210ENST00000530225 765 ntTSL 2 BASIC26.14■■□□□ 1.78
CALR3Q96L12 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC26.14■■□□□ 1.77
CALR3Q96L12 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
CALR3Q96L12 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
CALR3Q96L12 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
CALR3Q96L12 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC26.12■■□□□ 1.77
CALR3Q96L12 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
CALR3Q96L12 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC26.12■■□□□ 1.77
CALR3Q96L12 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
CALR3Q96L12 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
CALR3Q96L12 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC26.11■■□□□ 1.77
CALR3Q96L12 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
CALR3Q96L12 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC26.11■■□□□ 1.77
CALR3Q96L12 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
CALR3Q96L12 AC020928.2-201ENST00000588717 2197 ntBASIC26.11■■□□□ 1.77
CALR3Q96L12 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC26.11■■□□□ 1.77
CALR3Q96L12 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
CALR3Q96L12 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC26.1■■□□□ 1.77
CALR3Q96L12 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC26.09■■□□□ 1.77
CALR3Q96L12 DUX4L29-201ENST00000425409 679 ntBASIC26.09■■□□□ 1.77
CALR3Q96L12 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC26.09■■□□□ 1.77
CALR3Q96L12 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
CALR3Q96L12 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
CALR3Q96L12 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC26.08■■□□□ 1.77
CALR3Q96L12 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
CALR3Q96L12 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 72.5 ms