Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
CLHC1Q8NHS4 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
CLHC1Q8NHS4 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC23.82■■□□□ 1.4
CLHC1Q8NHS4 PEX7-203ENST00000541292 945 ntTSL 5 BASIC23.82■■□□□ 1.4
CLHC1Q8NHS4 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
CLHC1Q8NHS4 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC23.82■■□□□ 1.4
CLHC1Q8NHS4 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CLHC1Q8NHS4 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
CLHC1Q8NHS4 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC23.82■■□□□ 1.4
CLHC1Q8NHS4 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CLHC1Q8NHS4 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CLHC1Q8NHS4 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
CLHC1Q8NHS4 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
CLHC1Q8NHS4 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC23.81■■□□□ 1.4
CLHC1Q8NHS4 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
CLHC1Q8NHS4 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CLHC1Q8NHS4 RPS2P35-201ENST00000443417 897 ntBASIC23.81■■□□□ 1.4
CLHC1Q8NHS4 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC23.81■■□□□ 1.4
CLHC1Q8NHS4 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
CLHC1Q8NHS4 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC23.8■■□□□ 1.4
CLHC1Q8NHS4 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC23.8■■□□□ 1.4
CLHC1Q8NHS4 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC23.8■■□□□ 1.4
CLHC1Q8NHS4 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC23.8■■□□□ 1.4
CLHC1Q8NHS4 AL449106.1-201ENST00000608517 1980 ntBASIC23.8■■□□□ 1.4
CLHC1Q8NHS4 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CLHC1Q8NHS4 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC23.79■■□□□ 1.4
CLHC1Q8NHS4 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CLHC1Q8NHS4 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
CLHC1Q8NHS4 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
CLHC1Q8NHS4 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC23.78■■□□□ 1.4
CLHC1Q8NHS4 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CLHC1Q8NHS4 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CLHC1Q8NHS4 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC23.77■■□□□ 1.4
CLHC1Q8NHS4 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CLHC1Q8NHS4 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CLHC1Q8NHS4 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC23.77■■□□□ 1.4
CLHC1Q8NHS4 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC23.76■■□□□ 1.39
CLHC1Q8NHS4 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
CLHC1Q8NHS4 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
CLHC1Q8NHS4 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC23.75■■□□□ 1.39
CLHC1Q8NHS4 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC23.75■■□□□ 1.39
CLHC1Q8NHS4 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CLHC1Q8NHS4 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC23.75■■□□□ 1.39
CLHC1Q8NHS4 AC091060.1-201ENST00000623524 1766 ntBASIC23.75■■□□□ 1.39
CLHC1Q8NHS4 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC23.74■■□□□ 1.39
CLHC1Q8NHS4 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC23.74■■□□□ 1.39
CLHC1Q8NHS4 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC23.74■■□□□ 1.39
CLHC1Q8NHS4 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC23.74■■□□□ 1.39
CLHC1Q8NHS4 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC23.74■■□□□ 1.39
CLHC1Q8NHS4 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC23.73■■□□□ 1.39
CLHC1Q8NHS4 AP004609.3-201ENST00000610705 1884 ntBASIC23.73■■□□□ 1.39
CLHC1Q8NHS4 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CLHC1Q8NHS4 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CLHC1Q8NHS4 HGH1-207ENST00000628266 258 ntTSL 5 BASIC23.72■■□□□ 1.39
CLHC1Q8NHS4 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC23.72■■□□□ 1.39
CLHC1Q8NHS4 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC23.71■■□□□ 1.39
CLHC1Q8NHS4 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
CLHC1Q8NHS4 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC23.7■■□□□ 1.38
CLHC1Q8NHS4 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC23.7■■□□□ 1.38
CLHC1Q8NHS4 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
CLHC1Q8NHS4 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC23.69■■□□□ 1.38
CLHC1Q8NHS4 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
CLHC1Q8NHS4 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
CLHC1Q8NHS4 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC23.69■■□□□ 1.38
CLHC1Q8NHS4 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
CLHC1Q8NHS4 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC23.68■■□□□ 1.38
CLHC1Q8NHS4 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC23.68■■□□□ 1.38
CLHC1Q8NHS4 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC23.68■■□□□ 1.38
CLHC1Q8NHS4 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC23.67■■□□□ 1.38
CLHC1Q8NHS4 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC23.67■■□□□ 1.38
CLHC1Q8NHS4 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC23.67■■□□□ 1.38
CLHC1Q8NHS4 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC23.67■■□□□ 1.38
CLHC1Q8NHS4 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC23.67■■□□□ 1.38
CLHC1Q8NHS4 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC23.67■■□□□ 1.38
CLHC1Q8NHS4 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
CLHC1Q8NHS4 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
CLHC1Q8NHS4 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC23.66■■□□□ 1.38
CLHC1Q8NHS4 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
CLHC1Q8NHS4 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
CLHC1Q8NHS4 WHAMMP3-201ENST00000611636 1609 ntBASIC23.64■■□□□ 1.38
CLHC1Q8NHS4 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
CLHC1Q8NHS4 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC23.64■■□□□ 1.37
CLHC1Q8NHS4 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC23.64■■□□□ 1.37
CLHC1Q8NHS4 CHML-204ENST00000638121 920 ntTSL 2 BASIC23.64■■□□□ 1.37
CLHC1Q8NHS4 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
CLHC1Q8NHS4 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
CLHC1Q8NHS4 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
CLHC1Q8NHS4 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
CLHC1Q8NHS4 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
CLHC1Q8NHS4 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
CLHC1Q8NHS4 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
CLHC1Q8NHS4 RPS2-210ENST00000530225 765 ntTSL 2 BASIC23.61■■□□□ 1.37
CLHC1Q8NHS4 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC23.61■■□□□ 1.37
CLHC1Q8NHS4 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC23.61■■□□□ 1.37
CLHC1Q8NHS4 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
CLHC1Q8NHS4 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CLHC1Q8NHS4 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CLHC1Q8NHS4 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
CLHC1Q8NHS4 LINC01971-201ENST00000617888 1048 ntBASIC23.6■■□□□ 1.37
CLHC1Q8NHS4 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 263 ms