Protein–RNA interactions for Protein: Q86VR2

RETREG3, Reticulophagy regulator 3, humanhuman

Predictions only

Length 466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3Q86VR2 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
RETREG3Q86VR2 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC23.75■■□□□ 1.39
RETREG3Q86VR2 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC23.74■■□□□ 1.39
RETREG3Q86VR2 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
RETREG3Q86VR2 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
RETREG3Q86VR2 AC108673.1-201ENST00000510422 1159 ntBASIC23.74■■□□□ 1.39
RETREG3Q86VR2 AP004609.3-201ENST00000610705 1884 ntBASIC23.74■■□□□ 1.39
RETREG3Q86VR2 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
RETREG3Q86VR2 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
RETREG3Q86VR2 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC23.73■■□□□ 1.39
RETREG3Q86VR2 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC23.73■■□□□ 1.39
RETREG3Q86VR2 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
RETREG3Q86VR2 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC23.73■■□□□ 1.39
RETREG3Q86VR2 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
RETREG3Q86VR2 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
RETREG3Q86VR2 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
RETREG3Q86VR2 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
RETREG3Q86VR2 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC23.72■■□□□ 1.39
RETREG3Q86VR2 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
RETREG3Q86VR2 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
RETREG3Q86VR2 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
RETREG3Q86VR2 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
RETREG3Q86VR2 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC23.71■■□□□ 1.39
RETREG3Q86VR2 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC23.71■■□□□ 1.39
RETREG3Q86VR2 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC23.71■■□□□ 1.39
RETREG3Q86VR2 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
RETREG3Q86VR2 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
RETREG3Q86VR2 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
RETREG3Q86VR2 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
RETREG3Q86VR2 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
RETREG3Q86VR2 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
RETREG3Q86VR2 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC23.69■■□□□ 1.38
RETREG3Q86VR2 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
RETREG3Q86VR2 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
RETREG3Q86VR2 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC23.68■■□□□ 1.38
RETREG3Q86VR2 SUZ12P1-203ENST00000578195 985 ntBASIC23.68■■□□□ 1.38
RETREG3Q86VR2 HNRNPLP2-201ENST00000568980 1570 ntBASIC23.68■■□□□ 1.38
RETREG3Q86VR2 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
RETREG3Q86VR2 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
RETREG3Q86VR2 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
RETREG3Q86VR2 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
RETREG3Q86VR2 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC23.66■■□□□ 1.38
RETREG3Q86VR2 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
RETREG3Q86VR2 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
RETREG3Q86VR2 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC23.64■■□□□ 1.38
RETREG3Q86VR2 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
RETREG3Q86VR2 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
RETREG3Q86VR2 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC23.64■■□□□ 1.37
RETREG3Q86VR2 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC23.63■■□□□ 1.37
RETREG3Q86VR2 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
RETREG3Q86VR2 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
RETREG3Q86VR2 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
RETREG3Q86VR2 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
RETREG3Q86VR2 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
RETREG3Q86VR2 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
RETREG3Q86VR2 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC23.62■■□□□ 1.37
RETREG3Q86VR2 DUX4L28-201ENST00000623687 678 ntBASIC23.62■■□□□ 1.37
RETREG3Q86VR2 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC23.62■■□□□ 1.37
RETREG3Q86VR2 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
RETREG3Q86VR2 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC23.62■■□□□ 1.37
RETREG3Q86VR2 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC23.61■■□□□ 1.37
RETREG3Q86VR2 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC23.61■■□□□ 1.37
RETREG3Q86VR2 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC23.61■■□□□ 1.37
RETREG3Q86VR2 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC23.61■■□□□ 1.37
RETREG3Q86VR2 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC23.6■■□□□ 1.37
RETREG3Q86VR2 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
RETREG3Q86VR2 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
RETREG3Q86VR2 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
RETREG3Q86VR2 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
RETREG3Q86VR2 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC23.6■■□□□ 1.37
RETREG3Q86VR2 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
RETREG3Q86VR2 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC23.59■■□□□ 1.37
RETREG3Q86VR2 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
RETREG3Q86VR2 CALM3-209ENST00000597743 577 ntTSL 4 BASIC23.59■■□□□ 1.37
RETREG3Q86VR2 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC23.59■■□□□ 1.37
RETREG3Q86VR2 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC23.58■■□□□ 1.37
RETREG3Q86VR2 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
RETREG3Q86VR2 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC23.58■■□□□ 1.36
RETREG3Q86VR2 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC23.57■■□□□ 1.36
RETREG3Q86VR2 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
RETREG3Q86VR2 AC142472.1-201ENST00000612013 1741 ntBASIC23.57■■□□□ 1.36
RETREG3Q86VR2 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
RETREG3Q86VR2 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
RETREG3Q86VR2 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC23.57■■□□□ 1.36
RETREG3Q86VR2 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
RETREG3Q86VR2 CEBPA-AS1-201ENST00000592982 2198 ntBASIC23.56■■□□□ 1.36
RETREG3Q86VR2 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC23.56■■□□□ 1.36
RETREG3Q86VR2 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
RETREG3Q86VR2 AC093323.1-202ENST00000635031 2045 ntBASIC23.55■■□□□ 1.36
RETREG3Q86VR2 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
RETREG3Q86VR2 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC23.55■■□□□ 1.36
RETREG3Q86VR2 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC23.55■■□□□ 1.36
RETREG3Q86VR2 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC23.54■■□□□ 1.36
RETREG3Q86VR2 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
RETREG3Q86VR2 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
RETREG3Q86VR2 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC23.53■■□□□ 1.36
RETREG3Q86VR2 PEX7-203ENST00000541292 945 ntTSL 5 BASIC23.53■■□□□ 1.36
RETREG3Q86VR2 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
RETREG3Q86VR2 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
RETREG3Q86VR2 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 63.4 ms