Protein–RNA interactions for Protein: Q00839

HNRNPU, Heterogeneous nuclear ribonucleoprotein U, humanhuman

Known RBP eCLIP

Length 825 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNRNPUQ00839 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.72e-6■■□□□ 12.3
HNRNPUQ00839 SH3PXD2A-204ENST00000420222 3251 ntTSL 220.99■□□□□ 0.952e-6■■□□□ 12.3
HNRNPUQ00839 SH3PXD2A-203ENST00000369774 11468 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.42e-6■■□□□ 12.3
HNRNPUQ00839 SH3PXD2A-201ENST00000315994 5504 ntTSL 1 (best)17.39■□□□□ 0.372e-6■■□□□ 12.3
HNRNPUQ00839 SH3PXD2A-202ENST00000355946 11245 ntAPPRIS P2 TSL 1 (best) BASIC11.04□□□□□ -0.642e-6■■□□□ 12.3
HNRNPUQ00839 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.271e-6■■□□□ 12.2
HNRNPUQ00839 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC22.55■■□□□ 1.21e-6■■□□□ 12.2
HNRNPUQ00839 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC19.48■□□□□ 0.711e-6■■□□□ 12.2
HNRNPUQ00839 MPP1-218ENST00000494170 969 ntTSL 318.64■□□□□ 0.571e-6■■□□□ 12.2
HNRNPUQ00839 MPP1-210ENST00000462825 587 ntTSL 417.93■□□□□ 0.461e-6■■□□□ 12.2
HNRNPUQ00839 MPP1-208ENST00000439370 2066 ntTSL 516.6■□□□□ 0.251e-6■■□□□ 12.2
HNRNPUQ00839 MPP1-209ENST00000453245 729 ntTSL 515.1■□□□□ 0.011e-6■■□□□ 12.2
HNRNPUQ00839 MPP1-203ENST00000393529 794 ntTSL 510.73□□□□□ -0.691e-6■■□□□ 12.2
HNRNPUQ00839 MPP1-217ENST00000493871 585 ntTSL 210.35□□□□□ -0.751e-6■■□□□ 12.2
HNRNPUQ00839 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.116e-7■■□□□ 12.2
HNRNPUQ00839 GNB1L-204ENST00000453108 702 ntTSL 326.97■■□□□ 1.916e-7■■□□□ 12.2
HNRNPUQ00839 GNB1L-206ENST00000481086 854 ntTSL 322.97■■□□□ 1.276e-7■■□□□ 12.2
HNRNPUQ00839 RTL10-204ENST00000416337 730 ntAPPRIS ALT2 TSL 222.97■■□□□ 1.276e-7■■□□□ 12.2
HNRNPUQ00839 GNB1L-205ENST00000460402 1197 ntTSL 322.87■■□□□ 1.256e-7■■□□□ 12.2
HNRNPUQ00839 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC22.4■■□□□ 1.186e-7■■□□□ 12.2
HNRNPUQ00839 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.556e-7■■□□□ 12.2
HNRNPUQ00839 RTL10-202ENST00000405640 6785 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.416e-7■■□□□ 12.2
HNRNPUQ00839 RTL10-201ENST00000328554 6619 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.356e-7■■□□□ 12.2
HNRNPUQ00839 RTL10-205ENST00000484072 1385 ntTSL 217.23■□□□□ 0.356e-7■■□□□ 12.2
HNRNPUQ00839 RTL10-203ENST00000407472 6523 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.146e-7■■□□□ 12.2
HNRNPUQ00839 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.747e-7■■□□□ 12.2
HNRNPUQ00839 NCOR2-213ENST00000448614 582 ntTSL 319.31■□□□□ 0.687e-7■■□□□ 12.2
HNRNPUQ00839 NCOR2-215ENST00000458234 4675 ntAPPRIS ALT2 TSL 1 (best)18.86■□□□□ 0.617e-7■■□□□ 12.2
HNRNPUQ00839 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC18.31■□□□□ 0.527e-7■■□□□ 12.2
HNRNPUQ00839 NCOR2-201ENST00000356219 7226 ntTSL 5 BASIC17.76■□□□□ 0.437e-7■■□□□ 12.2
HNRNPUQ00839 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.437e-7■■□□□ 12.2
HNRNPUQ00839 NCOR2-204ENST00000405201 8533 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.37e-7■■□□□ 12.2
HNRNPUQ00839 AC005394.2-201ENST00000592347 3113 ntTSL 1 (best) BASIC19.12■□□□□ 0.654e-8■■□□□ 12.2
HNRNPUQ00839 AC005381.1-201ENST00000593065 769 ntTSL 3 BASIC15.02■□□□□ -04e-8■■□□□ 12.2
HNRNPUQ00839 AC005394.1-201ENST00000589999 1269 ntTSL 1 (best) BASIC13.29□□□□□ -0.284e-8■■□□□ 12.2
HNRNPUQ00839 NKD1-201ENST00000268459 17105 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.344e-7■■□□□ 12.1
HNRNPUQ00839 TET3-201ENST00000305799 5174 ntTSL 5 BASIC18.9■□□□□ 0.621e-6■■□□□ 12.1
HNRNPUQ00839 TET3-202ENST00000409262 11388 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.391e-6■■□□□ 12.1
HNRNPUQ00839 ZFHX3-203ENST00000397992 13841 ntTSL 1 (best) BASIC12.33□□□□□ -0.441e-6■■□□□ 12.1
HNRNPUQ00839 ZFHX3-201ENST00000268489 16064 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.511e-6■■□□□ 12.1
HNRNPUQ00839 ZFHX3-207ENST00000641206 16414 ntAPPRIS P1 BASIC10.35□□□□□ -0.751e-6■■□□□ 12.1
HNRNPUQ00839 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC20.79■□□□□ 0.928e-7■■□□□ 12.1
HNRNPUQ00839 GPC3-201ENST00000370818 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.398e-7■■□□□ 12.1
HNRNPUQ00839 GPC3-204ENST00000631057 1581 ntTSL 1 (best) BASIC11.14□□□□□ -0.638e-7■■□□□ 12.1
HNRNPUQ00839 MSI2-207ENST00000579205 500 ntTSL 419.67■□□□□ 0.742e-6■■□□□ 12
HNRNPUQ00839 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.19e-7■■□□□ 12
HNRNPUQ00839 NPAS2-202ENST00000427413 625 ntTSL 39.63□□□□□ -0.879e-7■■□□□ 12
HNRNPUQ00839 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC31.93■■■□□ 2.73e-9■■□□□ 12
HNRNPUQ00839 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.43e-9■■□□□ 12
HNRNPUQ00839 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.033e-9■■□□□ 12
HNRNPUQ00839 PTOV1-203ENST00000594165 986 ntTSL 324.5■■□□□ 1.513e-9■■□□□ 12
HNRNPUQ00839 PTOV1-213ENST00000600105 635 ntTSL 322.99■■□□□ 1.273e-9■■□□□ 12
HNRNPUQ00839 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC21.24■□□□□ 0.993e-9■■□□□ 12
HNRNPUQ00839 PTOV1-210ENST00000598325 1438 ntTSL 520.41■□□□□ 0.863e-9■■□□□ 12
HNRNPUQ00839 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC19.22■□□□□ 0.673e-9■■□□□ 12
HNRNPUQ00839 PTOV1-202ENST00000594151 995 ntTSL 517.66■□□□□ 0.423e-9■■□□□ 12
HNRNPUQ00839 PTOV1-218ENST00000601612 1480 ntTSL 217.38■□□□□ 0.373e-9■■□□□ 12
HNRNPUQ00839 PTOV1-215ENST00000600793 426 ntTSL 515.93■□□□□ 0.143e-9■■□□□ 12
HNRNPUQ00839 SFXN5-214ENST00000482289 895 ntTSL 1 (best)25.48■■□□□ 1.671e-6■■□□□ 12
HNRNPUQ00839 SFXN5-220ENST00000490056 906 ntTSL 1 (best)21.84■■□□□ 1.091e-6■■□□□ 12
HNRNPUQ00839 SFXN5-221ENST00000495208 808 ntTSL 1 (best)20.89■□□□□ 0.931e-6■■□□□ 12
HNRNPUQ00839 SFXN5-203ENST00000411783 915 ntTSL 317.79■□□□□ 0.441e-6■■□□□ 12
HNRNPUQ00839 SFXN5-207ENST00000461352 3578 ntTSL 1 (best)16.36■□□□□ 0.211e-6■■□□□ 12
HNRNPUQ00839 SFXN5-211ENST00000474528 4072 ntTSL 1 (best)16.22■□□□□ 0.191e-6■■□□□ 12
HNRNPUQ00839 SFXN5-201ENST00000272433 4140 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.041e-6■■□□□ 12
HNRNPUQ00839 SFXN5-202ENST00000410065 840 ntTSL 1 (best) BASIC14.69□□□□□ -0.061e-6■■□□□ 12
HNRNPUQ00839 SH3BP4-204ENST00000416021 593 ntTSL 326.87■■□□□ 1.892e-6■■□□□ 12
HNRNPUQ00839 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.372e-6■■□□□ 12
HNRNPUQ00839 GRAMD1B-210ENST00000534764 1689 ntTSL 1 (best)21.47■■□□□ 1.032e-6■■□□□ 11.9
HNRNPUQ00839 GRAMD1B-208ENST00000532581 2615 ntTSL 218.19■□□□□ 0.52e-6■■□□□ 11.9
HNRNPUQ00839 GRAMD1B-203ENST00000456860 2805 ntTSL 2 BASIC17.38■□□□□ 0.372e-6■■□□□ 11.9
HNRNPUQ00839 GRAMD1B-201ENST00000322282 2571 ntTSL 5 BASIC16.87■□□□□ 0.292e-6■■□□□ 11.9
HNRNPUQ00839 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.794e-11■■□□□ 11.9
HNRNPUQ00839 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC21.36■■□□□ 1.014e-11■■□□□ 11.9
HNRNPUQ00839 DYNC1LI2-209ENST00000565532 744 ntTSL 514.52□□□□□ -0.094e-11■■□□□ 11.9
HNRNPUQ00839 DYNC1LI2-208ENST00000564833 727 ntTSL 413.55□□□□□ -0.244e-11■■□□□ 11.9
HNRNPUQ00839 DYNC1LI2-211ENST00000567499 3994 ntTSL 29.93□□□□□ -0.824e-11■■□□□ 11.9
HNRNPUQ00839 DYNC1LI2-215ENST00000570201 292 ntTSL 34.1□□□□□ -1.752e-7■■□□□ 11.9
HNRNPUQ00839 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC32.53■■■□□ 2.84e-7■■□□□ 11.9
HNRNPUQ00839 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC26.98■■□□□ 1.914e-7■■□□□ 11.9
HNRNPUQ00839 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC26.48■■□□□ 1.834e-7■■□□□ 11.9
HNRNPUQ00839 CAPZB-207ENST00000459967 579 ntTSL 321.51■■□□□ 1.034e-7■■□□□ 11.9
HNRNPUQ00839 ARHGEF2-215ENST00000487755 2176 ntTSL 219.69■□□□□ 0.744e-7■■□□□ 11.9
HNRNPUQ00839 CAPZB-208ENST00000482808 660 ntTSL 218.73■□□□□ 0.594e-7■■□□□ 11.9
HNRNPUQ00839 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.274e-7■■□□□ 11.9
HNRNPUQ00839 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC30.49■■■□□ 2.472e-8■■□□□ 11.8
HNRNPUQ00839 ZYX-205ENST00000446634 926 ntTSL 523.34■■□□□ 1.332e-8■■□□□ 11.8
HNRNPUQ00839 ZYX-204ENST00000436448 632 ntTSL 422.23■■□□□ 1.152e-8■■□□□ 11.8
HNRNPUQ00839 ZYX-202ENST00000354434 2050 ntAPPRIS ALT2 TSL 220.58■□□□□ 0.882e-8■■□□□ 11.8
HNRNPUQ00839 ZYX-203ENST00000392910 2123 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.482e-8■■□□□ 11.8
HNRNPUQ00839 OAF-203ENST00000534735 651 ntTSL 514.91□□□□□ -0.022e-6■■□□□ 11.8
HNRNPUQ00839 CNKSR3-205ENST00000607772 21063 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.912e-6■■□□□ 11.8
HNRNPUQ00839 WDR1-209ENST00000505851 715 ntTSL 227.75■■■□□ 2.033e-7■■□□□ 11.8
HNRNPUQ00839 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC22.4■■□□□ 1.183e-7■■□□□ 11.8
HNRNPUQ00839 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC22.13■■□□□ 1.133e-7■■□□□ 11.8
HNRNPUQ00839 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.923e-7■■□□□ 11.8
HNRNPUQ00839 WDR1-216ENST00000514319 719 ntTSL 517.4■□□□□ 0.383e-7■■□□□ 11.8
HNRNPUQ00839 WDR1-211ENST00000508079 812 ntTSL 316.8■□□□□ 0.283e-7■■□□□ 11.8
HNRNPUQ00839 WDR1-204ENST00000499869 3054 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.193e-7■■□□□ 11.8
HNRNPUQ00839 NKD1-202ENST00000564336 477 ntTSL 328.29■■■□□ 2.122e-7■■□□□ 11.8
Retrieved 100 of 2,288 protein–RNA pairs in 179.2 ms