Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 RP9P-202ENST00000450133 1212 ntBASIC31.96■■■□□ 2.71
RFC4P35249 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC31.96■■■□□ 2.71
RFC4P35249 AC010980.1-201ENST00000587192 1142 ntBASIC31.96■■■□□ 2.71
RFC4P35249 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC31.96■■■□□ 2.71
RFC4P35249 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC31.96■■■□□ 2.71
RFC4P35249 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
RFC4P35249 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC31.95■■■□□ 2.71
RFC4P35249 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC31.95■■■□□ 2.71
RFC4P35249 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
RFC4P35249 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
RFC4P35249 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC31.94■■■□□ 2.7
RFC4P35249 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC31.93■■■□□ 2.7
RFC4P35249 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
RFC4P35249 KRT8P33-201ENST00000508125 1423 ntBASIC31.92■■■□□ 2.7
RFC4P35249 AP004833.2-201ENST00000532228 1454 ntBASIC31.92■■■□□ 2.7
RFC4P35249 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
RFC4P35249 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC31.92■■■□□ 2.7
RFC4P35249 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC31.92■■■□□ 2.7
RFC4P35249 AC093536.1-201ENST00000569153 554 ntBASIC31.92■■■□□ 2.7
RFC4P35249 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
RFC4P35249 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC31.91■■■□□ 2.7
RFC4P35249 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC31.91■■■□□ 2.7
RFC4P35249 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
RFC4P35249 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
RFC4P35249 AL592295.1-201ENST00000400984 884 ntBASIC31.91■■■□□ 2.7
RFC4P35249 AC074183.2-201ENST00000623112 922 ntBASIC31.91■■■□□ 2.7
RFC4P35249 AC100797.4-201ENST00000631653 1827 ntBASIC31.9■■■□□ 2.7
RFC4P35249 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC31.9■■■□□ 2.7
RFC4P35249 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC31.89■■■□□ 2.7
RFC4P35249 SPCS2P3-201ENST00000500401 656 ntBASIC31.89■■■□□ 2.7
RFC4P35249 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC31.89■■■□□ 2.7
RFC4P35249 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
RFC4P35249 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC31.89■■■□□ 2.7
RFC4P35249 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC31.88■■■□□ 2.69
RFC4P35249 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC31.88■■■□□ 2.69
RFC4P35249 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC31.88■■■□□ 2.69
RFC4P35249 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
RFC4P35249 RAP2CP1-202ENST00000605179 643 ntBASIC31.88■■■□□ 2.69
RFC4P35249 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
RFC4P35249 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
RFC4P35249 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
RFC4P35249 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC31.87■■■□□ 2.69
RFC4P35249 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
RFC4P35249 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC31.87■■■□□ 2.69
RFC4P35249 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC31.86■■■□□ 2.69
RFC4P35249 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC31.86■■■□□ 2.69
RFC4P35249 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
RFC4P35249 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
RFC4P35249 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC31.85■■■□□ 2.69
RFC4P35249 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC31.85■■■□□ 2.69
RFC4P35249 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC31.84■■■□□ 2.69
RFC4P35249 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
RFC4P35249 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC31.84■■■□□ 2.69
RFC4P35249 AC009299.2-201ENST00000482477 511 ntBASIC31.84■■■□□ 2.69
RFC4P35249 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC31.84■■■□□ 2.69
RFC4P35249 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
RFC4P35249 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
RFC4P35249 AC139795.1-202ENST00000500444 432 ntBASIC31.83■■■□□ 2.69
RFC4P35249 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
RFC4P35249 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC31.83■■■□□ 2.69
RFC4P35249 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC31.83■■■□□ 2.69
RFC4P35249 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC31.83■■■□□ 2.69
RFC4P35249 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC31.83■■■□□ 2.69
RFC4P35249 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
RFC4P35249 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC31.81■■■□□ 2.68
RFC4P35249 MIR6765-201ENST00000614092 87 ntBASIC31.81■■■□□ 2.68
RFC4P35249 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC31.81■■■□□ 2.68
RFC4P35249 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
RFC4P35249 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC31.8■■■□□ 2.68
RFC4P35249 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC31.8■■■□□ 2.68
RFC4P35249 BEX3-202ENST00000372634 753 ntTSL 2 BASIC31.8■■■□□ 2.68
RFC4P35249 YBX1P4-201ENST00000392794 808 ntBASIC31.8■■■□□ 2.68
RFC4P35249 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC31.8■■■□□ 2.68
RFC4P35249 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC31.8■■■□□ 2.68
RFC4P35249 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC31.8■■■□□ 2.68
RFC4P35249 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
RFC4P35249 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC31.79■■■□□ 2.68
RFC4P35249 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
RFC4P35249 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
RFC4P35249 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC31.78■■■□□ 2.68
RFC4P35249 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
RFC4P35249 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
RFC4P35249 MTURN-203ENST00000409688 843 ntTSL 2 BASIC31.78■■■□□ 2.68
RFC4P35249 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC31.78■■■□□ 2.68
RFC4P35249 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
RFC4P35249 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
RFC4P35249 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
RFC4P35249 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC31.78■■■□□ 2.68
RFC4P35249 AC103834.1-201ENST00000520383 144 ntBASIC31.77■■■□□ 2.68
RFC4P35249 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC31.77■■■□□ 2.68
RFC4P35249 MIR3960-201ENST00000583311 91 ntBASIC31.77■■■□□ 2.68
RFC4P35249 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC31.77■■■□□ 2.68
RFC4P35249 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
RFC4P35249 PFN2-211ENST00000489155 636 ntTSL 4 BASIC31.76■■■□□ 2.67
RFC4P35249 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
RFC4P35249 HYI-210ENST00000486909 905 ntTSL 5 BASIC31.75■■■□□ 2.67
RFC4P35249 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC31.75■■■□□ 2.67
RFC4P35249 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC31.75■■■□□ 2.67
RFC4P35249 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC31.74■■■□□ 2.67
RFC4P35249 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC31.74■■■□□ 2.67
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms