Protein–RNA interactions for Protein: P00558

PGK1, Phosphoglycerate kinase 1, humanhuman

Predictions only

Length 417 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PGK1P00558 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC28.18■■■□□ 2.1
PGK1P00558 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC28.18■■■□□ 2.1
PGK1P00558 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
PGK1P00558 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
PGK1P00558 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
PGK1P00558 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
PGK1P00558 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
PGK1P00558 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC28.17■■■□□ 2.1
PGK1P00558 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
PGK1P00558 DUX4L9-201ENST00000449051 1259 ntBASIC28.16■■■□□ 2.1
PGK1P00558 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
PGK1P00558 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC28.15■■■□□ 2.1
PGK1P00558 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
PGK1P00558 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
PGK1P00558 AC025884.2-201ENST00000553429 711 ntBASIC28.15■■■□□ 2.1
PGK1P00558 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC28.14■■■□□ 2.1
PGK1P00558 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC28.14■■■□□ 2.1
PGK1P00558 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC28.14■■■□□ 2.1
PGK1P00558 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC28.14■■■□□ 2.09
PGK1P00558 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC28.14■■■□□ 2.09
PGK1P00558 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
PGK1P00558 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC28.13■■■□□ 2.09
PGK1P00558 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
PGK1P00558 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC28.13■■■□□ 2.09
PGK1P00558 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC28.13■■■□□ 2.09
PGK1P00558 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC28.12■■■□□ 2.09
PGK1P00558 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC28.12■■■□□ 2.09
PGK1P00558 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC28.12■■■□□ 2.09
PGK1P00558 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
PGK1P00558 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC28.11■■■□□ 2.09
PGK1P00558 RP9P-202ENST00000450133 1212 ntBASIC28.11■■■□□ 2.09
PGK1P00558 BHLHE23-202ENST00000612929 1109 ntBASIC28.11■■■□□ 2.09
PGK1P00558 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC28.11■■■□□ 2.09
PGK1P00558 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC28.11■■■□□ 2.09
PGK1P00558 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
PGK1P00558 AC093536.1-201ENST00000569153 554 ntBASIC28.1■■■□□ 2.09
PGK1P00558 AC010980.1-201ENST00000587192 1142 ntBASIC28.1■■■□□ 2.09
PGK1P00558 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC28.1■■■□□ 2.09
PGK1P00558 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC28.1■■■□□ 2.09
PGK1P00558 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
PGK1P00558 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
PGK1P00558 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC28.09■■■□□ 2.09
PGK1P00558 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
PGK1P00558 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC28.09■■■□□ 2.09
PGK1P00558 SPCS2P3-201ENST00000500401 656 ntBASIC28.09■■■□□ 2.09
PGK1P00558 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC28.09■■■□□ 2.09
PGK1P00558 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC28.09■■■□□ 2.09
PGK1P00558 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
PGK1P00558 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
PGK1P00558 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC28.08■■■□□ 2.09
PGK1P00558 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC28.07■■■□□ 2.08
PGK1P00558 TRIR-205ENST00000592273 783 ntTSL 3 BASIC28.07■■■□□ 2.08
PGK1P00558 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC28.07■■■□□ 2.08
PGK1P00558 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC28.07■■■□□ 2.08
PGK1P00558 KRT8P33-201ENST00000508125 1423 ntBASIC28.07■■■□□ 2.08
PGK1P00558 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC28.06■■■□□ 2.08
PGK1P00558 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC28.06■■■□□ 2.08
PGK1P00558 RAP2CP1-202ENST00000605179 643 ntBASIC28.06■■■□□ 2.08
PGK1P00558 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
PGK1P00558 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC28.05■■■□□ 2.08
PGK1P00558 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC28.05■■■□□ 2.08
PGK1P00558 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC28.05■■■□□ 2.08
PGK1P00558 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
PGK1P00558 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
PGK1P00558 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC28.04■■■□□ 2.08
PGK1P00558 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC28.04■■■□□ 2.08
PGK1P00558 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC28.03■■■□□ 2.08
PGK1P00558 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
PGK1P00558 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
PGK1P00558 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC28.03■■■□□ 2.08
PGK1P00558 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC28.02■■■□□ 2.08
PGK1P00558 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC28.02■■■□□ 2.08
PGK1P00558 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC28.02■■■□□ 2.08
PGK1P00558 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC28.01■■■□□ 2.08
PGK1P00558 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC28.01■■■□□ 2.07
PGK1P00558 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC28.01■■■□□ 2.07
PGK1P00558 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC28.01■■■□□ 2.07
PGK1P00558 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
PGK1P00558 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC27.99■■■□□ 2.07
PGK1P00558 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC27.99■■■□□ 2.07
PGK1P00558 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
PGK1P00558 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
PGK1P00558 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC27.99■■■□□ 2.07
PGK1P00558 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC27.99■■■□□ 2.07
PGK1P00558 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
PGK1P00558 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC27.98■■■□□ 2.07
PGK1P00558 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC27.98■■■□□ 2.07
PGK1P00558 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC27.98■■■□□ 2.07
PGK1P00558 BEX3-202ENST00000372634 753 ntTSL 2 BASIC27.97■■■□□ 2.07
PGK1P00558 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC27.97■■■□□ 2.07
PGK1P00558 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
PGK1P00558 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC27.96■■■□□ 2.07
PGK1P00558 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC27.96■■■□□ 2.07
PGK1P00558 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
PGK1P00558 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
PGK1P00558 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC27.96■■■□□ 2.07
PGK1P00558 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
PGK1P00558 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC27.96■■■□□ 2.07
PGK1P00558 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC27.95■■■□□ 2.06
PGK1P00558 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms