Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
TRIM13O60858 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC24.48■■□□□ 1.51
TRIM13O60858 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC24.48■■□□□ 1.51
TRIM13O60858 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC24.47■■□□□ 1.51
TRIM13O60858 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
TRIM13O60858 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC24.47■■□□□ 1.51
TRIM13O60858 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC24.47■■□□□ 1.51
TRIM13O60858 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC24.47■■□□□ 1.51
TRIM13O60858 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC24.47■■□□□ 1.51
TRIM13O60858 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC24.47■■□□□ 1.51
TRIM13O60858 CALM3-209ENST00000597743 577 ntTSL 4 BASIC24.47■■□□□ 1.51
TRIM13O60858 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
TRIM13O60858 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
TRIM13O60858 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
TRIM13O60858 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
TRIM13O60858 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC24.46■■□□□ 1.51
TRIM13O60858 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC24.46■■□□□ 1.51
TRIM13O60858 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC24.46■■□□□ 1.51
TRIM13O60858 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
TRIM13O60858 AP004609.3-201ENST00000610705 1884 ntBASIC24.45■■□□□ 1.51
TRIM13O60858 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC24.45■■□□□ 1.5
TRIM13O60858 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
TRIM13O60858 MIR3665-201ENST00000578708 105 ntBASIC24.44■■□□□ 1.5
TRIM13O60858 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC24.44■■□□□ 1.5
TRIM13O60858 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
TRIM13O60858 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC24.43■■□□□ 1.5
TRIM13O60858 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
TRIM13O60858 AC020928.2-201ENST00000588717 2197 ntBASIC24.43■■□□□ 1.5
TRIM13O60858 AC092803.2-201ENST00000564287 1899 ntBASIC24.43■■□□□ 1.5
TRIM13O60858 DUSP8P4-201ENST00000399538 1761 ntBASIC24.42■■□□□ 1.5
TRIM13O60858 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC24.42■■□□□ 1.5
TRIM13O60858 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
TRIM13O60858 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
TRIM13O60858 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
TRIM13O60858 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC24.41■■□□□ 1.5
TRIM13O60858 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
TRIM13O60858 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
TRIM13O60858 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
TRIM13O60858 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC24.39■■□□□ 1.5
TRIM13O60858 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.5
TRIM13O60858 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC24.39■■□□□ 1.5
TRIM13O60858 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
TRIM13O60858 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC24.38■■□□□ 1.49
TRIM13O60858 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC24.38■■□□□ 1.49
TRIM13O60858 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC24.38■■□□□ 1.49
TRIM13O60858 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
TRIM13O60858 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
TRIM13O60858 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC24.37■■□□□ 1.49
TRIM13O60858 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
TRIM13O60858 CIB2-204ENST00000557846 934 ntTSL 3 BASIC24.37■■□□□ 1.49
TRIM13O60858 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC24.37■■□□□ 1.49
TRIM13O60858 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
TRIM13O60858 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
TRIM13O60858 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
TRIM13O60858 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC24.36■■□□□ 1.49
TRIM13O60858 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
TRIM13O60858 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
TRIM13O60858 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC24.35■■□□□ 1.49
TRIM13O60858 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
TRIM13O60858 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC24.35■■□□□ 1.49
TRIM13O60858 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC24.35■■□□□ 1.49
TRIM13O60858 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
TRIM13O60858 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
TRIM13O60858 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
TRIM13O60858 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC24.35■■□□□ 1.49
TRIM13O60858 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
TRIM13O60858 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC24.34■■□□□ 1.49
TRIM13O60858 PEX7-203ENST00000541292 945 ntTSL 5 BASIC24.34■■□□□ 1.49
TRIM13O60858 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC24.34■■□□□ 1.49
TRIM13O60858 AC110285.7-201ENST00000624417 1536 ntBASIC24.34■■□□□ 1.49
TRIM13O60858 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.49
TRIM13O60858 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
TRIM13O60858 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.49
TRIM13O60858 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC24.33■■□□□ 1.49
TRIM13O60858 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.48
TRIM13O60858 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC24.32■■□□□ 1.48
TRIM13O60858 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
TRIM13O60858 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
TRIM13O60858 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
TRIM13O60858 AC142472.1-201ENST00000612013 1741 ntBASIC24.32■■□□□ 1.48
TRIM13O60858 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC24.31■■□□□ 1.48
TRIM13O60858 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC24.31■■□□□ 1.48
TRIM13O60858 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
TRIM13O60858 AP006261.1-201ENST00000584783 668 ntBASIC24.31■■□□□ 1.48
TRIM13O60858 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC24.31■■□□□ 1.48
TRIM13O60858 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
TRIM13O60858 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC24.31■■□□□ 1.48
TRIM13O60858 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC24.3■■□□□ 1.48
TRIM13O60858 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC24.3■■□□□ 1.48
TRIM13O60858 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC24.29■■□□□ 1.48
TRIM13O60858 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC24.29■■□□□ 1.48
TRIM13O60858 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
TRIM13O60858 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
TRIM13O60858 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
TRIM13O60858 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
TRIM13O60858 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
TRIM13O60858 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
TRIM13O60858 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
TRIM13O60858 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
TRIM13O60858 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 88.8 ms