Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 AC131281.2-201ENST00000520478 145 ntBASIC24.39■■□□□ 1.49
CACNA1AO00555 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
CACNA1AO00555 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
CACNA1AO00555 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC24.39■■□□□ 1.49
CACNA1AO00555 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC24.39■■□□□ 1.49
CACNA1AO00555 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC24.38■■□□□ 1.49
CACNA1AO00555 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC24.38■■□□□ 1.49
CACNA1AO00555 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
CACNA1AO00555 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
CACNA1AO00555 AC135983.2-203ENST00000454486 1613 ntBASIC24.38■■□□□ 1.49
CACNA1AO00555 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
CACNA1AO00555 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
CACNA1AO00555 IDNK-201ENST00000376417 511 ntTSL 5 BASIC24.37■■□□□ 1.49
CACNA1AO00555 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
CACNA1AO00555 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC24.37■■□□□ 1.49
CACNA1AO00555 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
CACNA1AO00555 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC24.36■■□□□ 1.49
CACNA1AO00555 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
CACNA1AO00555 AC093536.1-201ENST00000569153 554 ntBASIC24.36■■□□□ 1.49
CACNA1AO00555 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC24.36■■□□□ 1.49
CACNA1AO00555 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
CACNA1AO00555 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC24.36■■□□□ 1.49
CACNA1AO00555 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC24.36■■□□□ 1.49
CACNA1AO00555 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC24.35■■□□□ 1.49
CACNA1AO00555 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC24.35■■□□□ 1.49
CACNA1AO00555 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
CACNA1AO00555 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
CACNA1AO00555 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
CACNA1AO00555 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC24.35■■□□□ 1.49
CACNA1AO00555 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
CACNA1AO00555 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC24.34■■□□□ 1.49
CACNA1AO00555 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CACNA1AO00555 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CACNA1AO00555 PEX7-203ENST00000541292 945 ntTSL 5 BASIC24.34■■□□□ 1.49
CACNA1AO00555 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
CACNA1AO00555 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
CACNA1AO00555 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC24.33■■□□□ 1.49
CACNA1AO00555 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC24.33■■□□□ 1.49
CACNA1AO00555 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC24.33■■□□□ 1.49
CACNA1AO00555 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC24.33■■□□□ 1.49
CACNA1AO00555 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC24.33■■□□□ 1.48
CACNA1AO00555 ESRRAP2-201ENST00000418437 1549 ntBASIC24.32■■□□□ 1.48
CACNA1AO00555 GUK1-205ENST00000366722 850 ntTSL 3 BASIC24.32■■□□□ 1.48
CACNA1AO00555 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC24.32■■□□□ 1.48
CACNA1AO00555 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC24.32■■□□□ 1.48
CACNA1AO00555 ZNRF2P3-201ENST00000424200 374 ntBASIC24.31■■□□□ 1.48
CACNA1AO00555 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC24.31■■□□□ 1.48
CACNA1AO00555 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC24.31■■□□□ 1.48
CACNA1AO00555 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC24.31■■□□□ 1.48
CACNA1AO00555 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC24.3■■□□□ 1.48
CACNA1AO00555 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC24.3■■□□□ 1.48
CACNA1AO00555 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC24.3■■□□□ 1.48
CACNA1AO00555 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CACNA1AO00555 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC24.3■■□□□ 1.48
CACNA1AO00555 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC24.29■■□□□ 1.48
CACNA1AO00555 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CACNA1AO00555 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC24.29■■□□□ 1.48
CACNA1AO00555 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
CACNA1AO00555 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC24.29■■□□□ 1.48
CACNA1AO00555 MIR5787-201ENST00000611784 55 ntBASIC24.29■■□□□ 1.48
CACNA1AO00555 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC24.28■■□□□ 1.48
CACNA1AO00555 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
CACNA1AO00555 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC24.28■■□□□ 1.48
CACNA1AO00555 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
CACNA1AO00555 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
CACNA1AO00555 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC24.28■■□□□ 1.48
CACNA1AO00555 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC24.27■■□□□ 1.48
CACNA1AO00555 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
CACNA1AO00555 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
CACNA1AO00555 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC24.27■■□□□ 1.48
CACNA1AO00555 LONRF2P2-201ENST00000439212 571 ntBASIC24.27■■□□□ 1.48
CACNA1AO00555 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC24.27■■□□□ 1.48
CACNA1AO00555 EBPL-204ENST00000378272 766 ntTSL 3 BASIC24.26■■□□□ 1.47
CACNA1AO00555 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
CACNA1AO00555 IDNK-203ENST00000405990 629 ntTSL 2 BASIC24.26■■□□□ 1.47
CACNA1AO00555 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC24.26■■□□□ 1.47
CACNA1AO00555 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC24.26■■□□□ 1.47
CACNA1AO00555 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC24.26■■□□□ 1.47
CACNA1AO00555 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
CACNA1AO00555 TK2-216ENST00000564917 1156 ntTSL 3 BASIC24.26■■□□□ 1.47
CACNA1AO00555 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC24.26■■□□□ 1.47
CACNA1AO00555 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC24.25■■□□□ 1.47
CACNA1AO00555 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC24.25■■□□□ 1.47
CACNA1AO00555 UNC93B8-201ENST00000511903 705 ntBASIC24.25■■□□□ 1.47
CACNA1AO00555 KRT125P-201ENST00000546827 989 ntBASIC24.25■■□□□ 1.47
CACNA1AO00555 AC133561.4-201ENST00000566112 224 ntBASIC24.25■■□□□ 1.47
CACNA1AO00555 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC24.24■■□□□ 1.47
CACNA1AO00555 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
CACNA1AO00555 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC24.24■■□□□ 1.47
CACNA1AO00555 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
CACNA1AO00555 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
CACNA1AO00555 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
CACNA1AO00555 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC24.24■■□□□ 1.47
CACNA1AO00555 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC24.23■■□□□ 1.47
CACNA1AO00555 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC24.23■■□□□ 1.47
CACNA1AO00555 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
CACNA1AO00555 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
CACNA1AO00555 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC24.22■■□□□ 1.47
CACNA1AO00555 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC24.22■■□□□ 1.47
CACNA1AO00555 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC24.22■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms