Protein–RNA interactions for Protein: Q9Y2J0

RPH3A, Rabphilin-3A, humanhuman

Predicted RBP Predictions only

Length 694 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPH3AQ9Y2J0 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
RPH3AQ9Y2J0 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
RPH3AQ9Y2J0 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC16.91■□□□□ 0.3
RPH3AQ9Y2J0 RNF152P1-201ENST00000397754 604 ntBASIC16.91■□□□□ 0.3
RPH3AQ9Y2J0 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC16.91■□□□□ 0.3
RPH3AQ9Y2J0 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC16.91■□□□□ 0.3
RPH3AQ9Y2J0 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
RPH3AQ9Y2J0 LTBR-211ENST00000543190 785 ntTSL 3 BASIC16.91■□□□□ 0.3
RPH3AQ9Y2J0 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
RPH3AQ9Y2J0 AL031432.5-201ENST00000641059 760 ntBASIC16.91■□□□□ 0.3
RPH3AQ9Y2J0 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC16.91■□□□□ 0.3
RPH3AQ9Y2J0 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
RPH3AQ9Y2J0 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RPH3AQ9Y2J0 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RPH3AQ9Y2J0 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
RPH3AQ9Y2J0 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RPH3AQ9Y2J0 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RPH3AQ9Y2J0 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC16.91■□□□□ 0.3
RPH3AQ9Y2J0 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RPH3AQ9Y2J0 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC16.91■□□□□ 0.3
RPH3AQ9Y2J0 NFYC-AS1-201ENST00000606277 1687 ntBASIC16.91■□□□□ 0.3
RPH3AQ9Y2J0 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
RPH3AQ9Y2J0 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RPH3AQ9Y2J0 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RPH3AQ9Y2J0 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
RPH3AQ9Y2J0 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RPH3AQ9Y2J0 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
RPH3AQ9Y2J0 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
RPH3AQ9Y2J0 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
RPH3AQ9Y2J0 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC16.9■□□□□ 0.3
RPH3AQ9Y2J0 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
RPH3AQ9Y2J0 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC16.9■□□□□ 0.3
RPH3AQ9Y2J0 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RPH3AQ9Y2J0 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
RPH3AQ9Y2J0 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
RPH3AQ9Y2J0 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
RPH3AQ9Y2J0 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC16.9■□□□□ 0.3
RPH3AQ9Y2J0 MIR564-202ENST00000385049 94 ntBASIC16.9■□□□□ 0.3
RPH3AQ9Y2J0 TSPY5P-201ENST00000426936 936 ntBASIC16.9■□□□□ 0.3
RPH3AQ9Y2J0 UPK3BP1-201ENST00000428678 509 ntBASIC16.9■□□□□ 0.3
RPH3AQ9Y2J0 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC16.9■□□□□ 0.3
RPH3AQ9Y2J0 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC16.9■□□□□ 0.3
RPH3AQ9Y2J0 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC16.9■□□□□ 0.3
RPH3AQ9Y2J0 AC092647.4-201ENST00000457211 535 ntBASIC16.9■□□□□ 0.3
RPH3AQ9Y2J0 KRT126P-201ENST00000549467 1181 ntBASIC16.9■□□□□ 0.3
RPH3AQ9Y2J0 ETFA-216ENST00000560726 942 ntTSL 3 BASIC16.9■□□□□ 0.3
RPH3AQ9Y2J0 GCSHP2-201ENST00000560971 527 ntBASIC16.9■□□□□ 0.3
RPH3AQ9Y2J0 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC16.9■□□□□ 0.3
RPH3AQ9Y2J0 NEK4P2-201ENST00000580004 1012 ntBASIC16.9■□□□□ 0.3
RPH3AQ9Y2J0 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
RPH3AQ9Y2J0 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC16.9■□□□□ 0.3
RPH3AQ9Y2J0 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
RPH3AQ9Y2J0 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
RPH3AQ9Y2J0 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC16.9■□□□□ 0.3
RPH3AQ9Y2J0 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RPH3AQ9Y2J0 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
RPH3AQ9Y2J0 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC16.9■□□□□ 0.3
RPH3AQ9Y2J0 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
RPH3AQ9Y2J0 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
RPH3AQ9Y2J0 MTMR9LP-203ENST00000426597 1545 ntBASIC16.9■□□□□ 0.3
RPH3AQ9Y2J0 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
RPH3AQ9Y2J0 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RPH3AQ9Y2J0 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC16.9■□□□□ 0.3
RPH3AQ9Y2J0 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
RPH3AQ9Y2J0 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
RPH3AQ9Y2J0 Z98044.1-201ENST00000632503 1764 ntBASIC16.89■□□□□ 0.3
RPH3AQ9Y2J0 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
RPH3AQ9Y2J0 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
RPH3AQ9Y2J0 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
RPH3AQ9Y2J0 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
RPH3AQ9Y2J0 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC16.89■□□□□ 0.29
RPH3AQ9Y2J0 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RPH3AQ9Y2J0 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
RPH3AQ9Y2J0 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RPH3AQ9Y2J0 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RPH3AQ9Y2J0 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
RPH3AQ9Y2J0 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC16.89■□□□□ 0.29
RPH3AQ9Y2J0 KRT18P23-201ENST00000435622 1283 ntBASIC16.89■□□□□ 0.29
RPH3AQ9Y2J0 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC16.89■□□□□ 0.29
RPH3AQ9Y2J0 NMU-205ENST00000511469 756 ntTSL 3 BASIC16.89■□□□□ 0.29
RPH3AQ9Y2J0 TOLLIP-AS1-201ENST00000530897 939 ntBASIC16.89■□□□□ 0.29
RPH3AQ9Y2J0 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC16.89■□□□□ 0.29
RPH3AQ9Y2J0 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC16.89■□□□□ 0.29
RPH3AQ9Y2J0 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC16.89■□□□□ 0.29
RPH3AQ9Y2J0 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC16.89■□□□□ 0.29
RPH3AQ9Y2J0 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
RPH3AQ9Y2J0 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
RPH3AQ9Y2J0 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC16.89■□□□□ 0.29
RPH3AQ9Y2J0 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
RPH3AQ9Y2J0 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
RPH3AQ9Y2J0 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC16.89■□□□□ 0.29
RPH3AQ9Y2J0 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
RPH3AQ9Y2J0 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
RPH3AQ9Y2J0 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC16.88■□□□□ 0.29
RPH3AQ9Y2J0 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RPH3AQ9Y2J0 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
RPH3AQ9Y2J0 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
RPH3AQ9Y2J0 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
RPH3AQ9Y2J0 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
RPH3AQ9Y2J0 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms