Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
BLOC1S4Q9NUP1 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC20.51■□□□□ 0.87
BLOC1S4Q9NUP1 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
BLOC1S4Q9NUP1 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
BLOC1S4Q9NUP1 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
BLOC1S4Q9NUP1 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
BLOC1S4Q9NUP1 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC20.51■□□□□ 0.87
BLOC1S4Q9NUP1 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC20.51■□□□□ 0.87
BLOC1S4Q9NUP1 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
BLOC1S4Q9NUP1 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
BLOC1S4Q9NUP1 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
BLOC1S4Q9NUP1 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC20.51■□□□□ 0.87
BLOC1S4Q9NUP1 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
BLOC1S4Q9NUP1 ARL16-209ENST00000573715 763 ntTSL 3 BASIC20.51■□□□□ 0.87
BLOC1S4Q9NUP1 ARL16-211ENST00000576135 694 ntTSL 3 BASIC20.51■□□□□ 0.87
BLOC1S4Q9NUP1 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
BLOC1S4Q9NUP1 RBM42-202ENST00000586618 771 ntTSL 3 BASIC20.51■□□□□ 0.87
BLOC1S4Q9NUP1 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC20.51■□□□□ 0.87
BLOC1S4Q9NUP1 AC006011.2-201ENST00000621313 1158 ntBASIC20.51■□□□□ 0.87
BLOC1S4Q9NUP1 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
BLOC1S4Q9NUP1 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
BLOC1S4Q9NUP1 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
BLOC1S4Q9NUP1 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
BLOC1S4Q9NUP1 POR-209ENST00000439269 1858 ntTSL 2 BASIC20.51■□□□□ 0.87
BLOC1S4Q9NUP1 AL024508.2-201ENST00000607749 1894 ntBASIC20.51■□□□□ 0.87
BLOC1S4Q9NUP1 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC20.51■□□□□ 0.87
BLOC1S4Q9NUP1 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
BLOC1S4Q9NUP1 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
BLOC1S4Q9NUP1 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
BLOC1S4Q9NUP1 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
BLOC1S4Q9NUP1 GMCL1P1-201ENST00000463439 1581 ntBASIC20.51■□□□□ 0.87
BLOC1S4Q9NUP1 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
BLOC1S4Q9NUP1 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
BLOC1S4Q9NUP1 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
BLOC1S4Q9NUP1 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
BLOC1S4Q9NUP1 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
BLOC1S4Q9NUP1 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC20.5■□□□□ 0.87
BLOC1S4Q9NUP1 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
BLOC1S4Q9NUP1 RCN1P1-201ENST00000400413 996 ntBASIC20.5■□□□□ 0.87
BLOC1S4Q9NUP1 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC20.5■□□□□ 0.87
BLOC1S4Q9NUP1 BX664615.1-201ENST00000443558 458 ntBASIC20.5■□□□□ 0.87
BLOC1S4Q9NUP1 YBX1P2-201ENST00000489612 999 ntBASIC20.5■□□□□ 0.87
BLOC1S4Q9NUP1 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC20.5■□□□□ 0.87
BLOC1S4Q9NUP1 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC20.5■□□□□ 0.87
BLOC1S4Q9NUP1 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC20.5■□□□□ 0.87
BLOC1S4Q9NUP1 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
BLOC1S4Q9NUP1 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
BLOC1S4Q9NUP1 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC20.5■□□□□ 0.87
BLOC1S4Q9NUP1 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
BLOC1S4Q9NUP1 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
BLOC1S4Q9NUP1 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC20.5■□□□□ 0.87
BLOC1S4Q9NUP1 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
BLOC1S4Q9NUP1 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
BLOC1S4Q9NUP1 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC20.5■□□□□ 0.87
BLOC1S4Q9NUP1 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
BLOC1S4Q9NUP1 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
BLOC1S4Q9NUP1 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC20.5■□□□□ 0.87
BLOC1S4Q9NUP1 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
BLOC1S4Q9NUP1 PHGDH-209ENST00000641074 1780 ntBASIC20.49■□□□□ 0.87
BLOC1S4Q9NUP1 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
BLOC1S4Q9NUP1 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC20.49■□□□□ 0.87
BLOC1S4Q9NUP1 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC20.49■□□□□ 0.87
BLOC1S4Q9NUP1 AC092865.7-201ENST00000641832 219 ntBASIC20.49■□□□□ 0.87
BLOC1S4Q9NUP1 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
BLOC1S4Q9NUP1 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
BLOC1S4Q9NUP1 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
BLOC1S4Q9NUP1 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
BLOC1S4Q9NUP1 FLYWCH1P1-201ENST00000460917 1874 ntBASIC20.49■□□□□ 0.87
BLOC1S4Q9NUP1 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
BLOC1S4Q9NUP1 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
BLOC1S4Q9NUP1 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
BLOC1S4Q9NUP1 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
BLOC1S4Q9NUP1 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
BLOC1S4Q9NUP1 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
BLOC1S4Q9NUP1 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC20.48■□□□□ 0.87
BLOC1S4Q9NUP1 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
BLOC1S4Q9NUP1 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
BLOC1S4Q9NUP1 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
BLOC1S4Q9NUP1 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
BLOC1S4Q9NUP1 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
BLOC1S4Q9NUP1 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC20.48■□□□□ 0.87
BLOC1S4Q9NUP1 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC20.48■□□□□ 0.87
BLOC1S4Q9NUP1 ANKRD20A18P-201ENST00000359341 492 ntBASIC20.48■□□□□ 0.87
BLOC1S4Q9NUP1 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
BLOC1S4Q9NUP1 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
BLOC1S4Q9NUP1 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC20.48■□□□□ 0.87
BLOC1S4Q9NUP1 REEP1-209ENST00000541910 969 ntTSL 2 BASIC20.48■□□□□ 0.87
BLOC1S4Q9NUP1 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
BLOC1S4Q9NUP1 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC20.48■□□□□ 0.87
BLOC1S4Q9NUP1 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
BLOC1S4Q9NUP1 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
BLOC1S4Q9NUP1 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC20.48■□□□□ 0.87
BLOC1S4Q9NUP1 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
BLOC1S4Q9NUP1 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
BLOC1S4Q9NUP1 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
BLOC1S4Q9NUP1 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
BLOC1S4Q9NUP1 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
BLOC1S4Q9NUP1 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC20.48■□□□□ 0.87
BLOC1S4Q9NUP1 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
BLOC1S4Q9NUP1 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 64 ms