Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 MMD2-204ENST00000612910 778 ntTSL 5 BASIC16.12■□□□□ 0.17
NKX3-1Q99801 FAM197Y4-202ENST00000622692 608 ntBASIC16.12■□□□□ 0.17
NKX3-1Q99801 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC16.12■□□□□ 0.17
NKX3-1Q99801 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC16.12■□□□□ 0.17
NKX3-1Q99801 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
NKX3-1Q99801 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
NKX3-1Q99801 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
NKX3-1Q99801 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
NKX3-1Q99801 FST-202ENST00000396947 2538 ntTSL 5 BASIC16.12■□□□□ 0.17
NKX3-1Q99801 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
NKX3-1Q99801 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC16.12■□□□□ 0.17
NKX3-1Q99801 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC16.12■□□□□ 0.17
NKX3-1Q99801 AL357033.4-201ENST00000617703 1807 ntBASIC16.12■□□□□ 0.17
NKX3-1Q99801 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
NKX3-1Q99801 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
NKX3-1Q99801 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
NKX3-1Q99801 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
NKX3-1Q99801 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC16.11■□□□□ 0.17
NKX3-1Q99801 AC139713.2-201ENST00000641328 2723 ntBASIC16.11■□□□□ 0.17
NKX3-1Q99801 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
NKX3-1Q99801 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
NKX3-1Q99801 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
NKX3-1Q99801 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
NKX3-1Q99801 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
NKX3-1Q99801 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
NKX3-1Q99801 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
NKX3-1Q99801 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
NKX3-1Q99801 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
NKX3-1Q99801 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
NKX3-1Q99801 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC16.11■□□□□ 0.17
NKX3-1Q99801 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
NKX3-1Q99801 AC239809.2-201ENST00000415381 517 ntBASIC16.11■□□□□ 0.17
NKX3-1Q99801 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC16.11■□□□□ 0.17
NKX3-1Q99801 AC098590.1-201ENST00000468126 897 ntBASIC16.11■□□□□ 0.17
NKX3-1Q99801 AC093827.2-201ENST00000512654 315 ntBASIC16.11■□□□□ 0.17
NKX3-1Q99801 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC16.11■□□□□ 0.17
NKX3-1Q99801 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC16.11■□□□□ 0.17
NKX3-1Q99801 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC16.11■□□□□ 0.17
NKX3-1Q99801 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
NKX3-1Q99801 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
NKX3-1Q99801 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC16.11■□□□□ 0.17
NKX3-1Q99801 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
NKX3-1Q99801 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
NKX3-1Q99801 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
NKX3-1Q99801 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
NKX3-1Q99801 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC16.11■□□□□ 0.17
NKX3-1Q99801 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
NKX3-1Q99801 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC16.11■□□□□ 0.17
NKX3-1Q99801 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC16.11■□□□□ 0.17
NKX3-1Q99801 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
NKX3-1Q99801 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
NKX3-1Q99801 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC16.1■□□□□ 0.17
NKX3-1Q99801 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
NKX3-1Q99801 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
NKX3-1Q99801 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
NKX3-1Q99801 AC134043.2-201ENST00000624206 2238 ntBASIC16.1■□□□□ 0.17
NKX3-1Q99801 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC16.1■□□□□ 0.17
NKX3-1Q99801 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
NKX3-1Q99801 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
NKX3-1Q99801 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC16.1■□□□□ 0.17
NKX3-1Q99801 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC16.1■□□□□ 0.17
NKX3-1Q99801 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
NKX3-1Q99801 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
NKX3-1Q99801 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
NKX3-1Q99801 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
NKX3-1Q99801 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
NKX3-1Q99801 SERF2-207ENST00000409614 582 ntTSL 2 BASIC16.1■□□□□ 0.17
NKX3-1Q99801 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
NKX3-1Q99801 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC16.1■□□□□ 0.17
NKX3-1Q99801 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
NKX3-1Q99801 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
NKX3-1Q99801 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
NKX3-1Q99801 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC16.1■□□□□ 0.17
NKX3-1Q99801 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
NKX3-1Q99801 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
NKX3-1Q99801 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
NKX3-1Q99801 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
NKX3-1Q99801 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
NKX3-1Q99801 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
NKX3-1Q99801 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
NKX3-1Q99801 REXO1L9P-201ENST00000604264 2108 ntBASIC16.1■□□□□ 0.17
NKX3-1Q99801 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
NKX3-1Q99801 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
NKX3-1Q99801 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
NKX3-1Q99801 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC16.1■□□□□ 0.17
NKX3-1Q99801 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
NKX3-1Q99801 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
NKX3-1Q99801 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC16.1■□□□□ 0.17
NKX3-1Q99801 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC16.1■□□□□ 0.17
NKX3-1Q99801 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
NKX3-1Q99801 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC16.1■□□□□ 0.17
NKX3-1Q99801 PKD1P1-201ENST00000458669 6805 ntBASIC16.1■□□□□ 0.17
NKX3-1Q99801 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC16.1■□□□□ 0.17
NKX3-1Q99801 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC16.09■□□□□ 0.17
NKX3-1Q99801 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC16.09■□□□□ 0.17
NKX3-1Q99801 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
NKX3-1Q99801 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
NKX3-1Q99801 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
NKX3-1Q99801 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NKX3-1Q99801 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms