Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLIP4Q8N3C7 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLIP4Q8N3C7 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
CLIP4Q8N3C7 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.3■□□□□ 0.36
CLIP4Q8N3C7 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLIP4Q8N3C7 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CLIP4Q8N3C7 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
CLIP4Q8N3C7 CD276-201ENST00000318424 2738 ntTSL 5 BASIC17.3■□□□□ 0.36
CLIP4Q8N3C7 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLIP4Q8N3C7 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC17.3■□□□□ 0.36
CLIP4Q8N3C7 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.3■□□□□ 0.36
CLIP4Q8N3C7 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC17.3■□□□□ 0.36
CLIP4Q8N3C7 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLIP4Q8N3C7 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
CLIP4Q8N3C7 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC17.3■□□□□ 0.36
CLIP4Q8N3C7 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC17.3■□□□□ 0.36
CLIP4Q8N3C7 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC17.3■□□□□ 0.36
CLIP4Q8N3C7 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC17.3■□□□□ 0.36
CLIP4Q8N3C7 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLIP4Q8N3C7 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CLIP4Q8N3C7 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC17.3■□□□□ 0.36
CLIP4Q8N3C7 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.3■□□□□ 0.36
CLIP4Q8N3C7 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CLIP4Q8N3C7 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
CLIP4Q8N3C7 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
CLIP4Q8N3C7 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
CLIP4Q8N3C7 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
CLIP4Q8N3C7 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLIP4Q8N3C7 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLIP4Q8N3C7 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLIP4Q8N3C7 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
CLIP4Q8N3C7 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
CLIP4Q8N3C7 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC17.3■□□□□ 0.36
CLIP4Q8N3C7 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC17.3■□□□□ 0.36
CLIP4Q8N3C7 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CLIP4Q8N3C7 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLIP4Q8N3C7 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLIP4Q8N3C7 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC17.29■□□□□ 0.36
CLIP4Q8N3C7 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLIP4Q8N3C7 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
CLIP4Q8N3C7 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC17.29■□□□□ 0.36
CLIP4Q8N3C7 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLIP4Q8N3C7 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLIP4Q8N3C7 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.29■□□□□ 0.36
CLIP4Q8N3C7 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CLIP4Q8N3C7 AC008894.3-201ENST00000624324 3103 ntBASIC17.29■□□□□ 0.36
CLIP4Q8N3C7 AC067852.2-201ENST00000590513 2313 ntBASIC17.29■□□□□ 0.36
CLIP4Q8N3C7 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CLIP4Q8N3C7 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLIP4Q8N3C7 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC17.29■□□□□ 0.36
CLIP4Q8N3C7 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC17.29■□□□□ 0.36
CLIP4Q8N3C7 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC17.29■□□□□ 0.36
CLIP4Q8N3C7 CD177P1-201ENST00000606252 935 ntBASIC17.29■□□□□ 0.36
CLIP4Q8N3C7 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLIP4Q8N3C7 EFTUD1P1-204ENST00000560401 1798 ntBASIC17.29■□□□□ 0.36
CLIP4Q8N3C7 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC17.29■□□□□ 0.36
CLIP4Q8N3C7 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLIP4Q8N3C7 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLIP4Q8N3C7 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLIP4Q8N3C7 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
CLIP4Q8N3C7 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC17.29■□□□□ 0.36
CLIP4Q8N3C7 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLIP4Q8N3C7 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLIP4Q8N3C7 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLIP4Q8N3C7 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
CLIP4Q8N3C7 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC17.28■□□□□ 0.36
CLIP4Q8N3C7 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP4Q8N3C7 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP4Q8N3C7 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP4Q8N3C7 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
CLIP4Q8N3C7 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP4Q8N3C7 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP4Q8N3C7 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
CLIP4Q8N3C7 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC17.28■□□□□ 0.36
CLIP4Q8N3C7 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP4Q8N3C7 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP4Q8N3C7 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP4Q8N3C7 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP4Q8N3C7 AL158047.1-201ENST00000445918 881 ntBASIC17.28■□□□□ 0.36
CLIP4Q8N3C7 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC17.28■□□□□ 0.36
CLIP4Q8N3C7 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC17.28■□□□□ 0.36
CLIP4Q8N3C7 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP4Q8N3C7 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP4Q8N3C7 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP4Q8N3C7 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP4Q8N3C7 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC17.28■□□□□ 0.36
CLIP4Q8N3C7 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.28■□□□□ 0.36
CLIP4Q8N3C7 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.28■□□□□ 0.36
CLIP4Q8N3C7 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP4Q8N3C7 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
CLIP4Q8N3C7 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLIP4Q8N3C7 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CLIP4Q8N3C7 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLIP4Q8N3C7 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.27■□□□□ 0.36
CLIP4Q8N3C7 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLIP4Q8N3C7 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC17.27■□□□□ 0.36
CLIP4Q8N3C7 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLIP4Q8N3C7 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC17.27■□□□□ 0.36
CLIP4Q8N3C7 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
CLIP4Q8N3C7 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms