Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 FLYWCH1P1-201ENST00000460917 1874 ntBASIC11.53□□□□□ -0.56
LINC00643Q86TS7 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC11.52□□□□□ -0.56
LINC00643Q86TS7 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC11.52□□□□□ -0.56
LINC00643Q86TS7 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
LINC00643Q86TS7 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC11.52□□□□□ -0.56
LINC00643Q86TS7 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
LINC00643Q86TS7 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.56
LINC00643Q86TS7 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
LINC00643Q86TS7 ANKRD18DP-204ENST00000455355 1975 ntBASIC11.52□□□□□ -0.56
LINC00643Q86TS7 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC11.52□□□□□ -0.56
LINC00643Q86TS7 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.56
LINC00643Q86TS7 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
LINC00643Q86TS7 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
LINC00643Q86TS7 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.56
LINC00643Q86TS7 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
LINC00643Q86TS7 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC11.52□□□□□ -0.56
LINC00643Q86TS7 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC11.52□□□□□ -0.56
LINC00643Q86TS7 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
LINC00643Q86TS7 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.56
LINC00643Q86TS7 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.56
LINC00643Q86TS7 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00643Q86TS7 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00643Q86TS7 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00643Q86TS7 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00643Q86TS7 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00643Q86TS7 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00643Q86TS7 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00643Q86TS7 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00643Q86TS7 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00643Q86TS7 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00643Q86TS7 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00643Q86TS7 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC11.52□□□□□ -0.57
LINC00643Q86TS7 LYSMD4-203ENST00000378904 2122 ntBASIC11.52□□□□□ -0.57
LINC00643Q86TS7 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC11.52□□□□□ -0.57
LINC00643Q86TS7 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00643Q86TS7 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00643Q86TS7 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00643Q86TS7 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00643Q86TS7 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00643Q86TS7 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC11.52□□□□□ -0.57
LINC00643Q86TS7 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00643Q86TS7 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00643Q86TS7 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00643Q86TS7 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC11.52□□□□□ -0.57
LINC00643Q86TS7 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00643Q86TS7 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00643Q86TS7 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00643Q86TS7 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00643Q86TS7 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
LINC00643Q86TS7 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00643Q86TS7 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00643Q86TS7 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00643Q86TS7 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00643Q86TS7 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC11.51□□□□□ -0.57
LINC00643Q86TS7 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00643Q86TS7 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00643Q86TS7 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00643Q86TS7 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00643Q86TS7 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
LINC00643Q86TS7 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC11.51□□□□□ -0.57
LINC00643Q86TS7 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC11.51□□□□□ -0.57
LINC00643Q86TS7 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00643Q86TS7 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC11.51□□□□□ -0.57
LINC00643Q86TS7 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00643Q86TS7 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00643Q86TS7 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00643Q86TS7 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00643Q86TS7 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC11.51□□□□□ -0.57
LINC00643Q86TS7 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00643Q86TS7 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
LINC00643Q86TS7 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00643Q86TS7 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC11.51□□□□□ -0.57
LINC00643Q86TS7 THA1P-201ENST00000590384 1145 ntBASIC11.51□□□□□ -0.57
LINC00643Q86TS7 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC11.51□□□□□ -0.57
LINC00643Q86TS7 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00643Q86TS7 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00643Q86TS7 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC11.51□□□□□ -0.57
LINC00643Q86TS7 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00643Q86TS7 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00643Q86TS7 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00643Q86TS7 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00643Q86TS7 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC11.51□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms