Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
KRT39Q6A163 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC19.92■□□□□ 0.78
KRT39Q6A163 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
KRT39Q6A163 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
KRT39Q6A163 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
KRT39Q6A163 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC19.92■□□□□ 0.78
KRT39Q6A163 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
KRT39Q6A163 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC19.92■□□□□ 0.78
KRT39Q6A163 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC19.92■□□□□ 0.78
KRT39Q6A163 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
KRT39Q6A163 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC19.92■□□□□ 0.78
KRT39Q6A163 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC19.92■□□□□ 0.78
KRT39Q6A163 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
KRT39Q6A163 P4HB-223ENST00000576390 439 ntTSL 4 BASIC19.92■□□□□ 0.78
KRT39Q6A163 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC19.92■□□□□ 0.78
KRT39Q6A163 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
KRT39Q6A163 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
KRT39Q6A163 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
KRT39Q6A163 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
KRT39Q6A163 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
KRT39Q6A163 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
KRT39Q6A163 AC073508.3-201ENST00000619697 1419 ntBASIC19.92■□□□□ 0.78
KRT39Q6A163 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC19.92■□□□□ 0.78
KRT39Q6A163 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
KRT39Q6A163 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
KRT39Q6A163 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
KRT39Q6A163 AC099343.3-201ENST00000605834 2503 ntBASIC19.92■□□□□ 0.78
KRT39Q6A163 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
KRT39Q6A163 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
KRT39Q6A163 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
KRT39Q6A163 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
KRT39Q6A163 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
KRT39Q6A163 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC19.91■□□□□ 0.78
KRT39Q6A163 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
KRT39Q6A163 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
KRT39Q6A163 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
KRT39Q6A163 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
KRT39Q6A163 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC19.91■□□□□ 0.78
KRT39Q6A163 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
KRT39Q6A163 CD70-202ENST00000423145 881 ntTSL 2 BASIC19.91■□□□□ 0.78
KRT39Q6A163 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
KRT39Q6A163 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC19.91■□□□□ 0.78
KRT39Q6A163 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
KRT39Q6A163 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC19.91■□□□□ 0.78
KRT39Q6A163 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC19.91■□□□□ 0.78
KRT39Q6A163 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
KRT39Q6A163 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
KRT39Q6A163 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC19.91■□□□□ 0.78
KRT39Q6A163 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
KRT39Q6A163 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
KRT39Q6A163 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC19.91■□□□□ 0.78
KRT39Q6A163 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC19.91■□□□□ 0.78
KRT39Q6A163 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
KRT39Q6A163 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC19.91■□□□□ 0.78
KRT39Q6A163 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
KRT39Q6A163 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
KRT39Q6A163 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC19.9■□□□□ 0.78
KRT39Q6A163 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
KRT39Q6A163 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
KRT39Q6A163 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC19.9■□□□□ 0.78
KRT39Q6A163 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC19.9■□□□□ 0.78
KRT39Q6A163 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC19.9■□□□□ 0.78
KRT39Q6A163 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC19.9■□□□□ 0.78
KRT39Q6A163 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC19.9■□□□□ 0.78
KRT39Q6A163 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
KRT39Q6A163 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC19.9■□□□□ 0.78
KRT39Q6A163 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
KRT39Q6A163 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
KRT39Q6A163 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
KRT39Q6A163 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
KRT39Q6A163 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
KRT39Q6A163 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
KRT39Q6A163 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC19.9■□□□□ 0.78
KRT39Q6A163 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.78
KRT39Q6A163 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.78
KRT39Q6A163 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
KRT39Q6A163 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
KRT39Q6A163 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC19.89■□□□□ 0.77
KRT39Q6A163 AC005521.1-201ENST00000393351 872 ntBASIC19.89■□□□□ 0.77
KRT39Q6A163 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC19.89■□□□□ 0.77
KRT39Q6A163 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC19.89■□□□□ 0.77
KRT39Q6A163 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
KRT39Q6A163 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC19.89■□□□□ 0.77
KRT39Q6A163 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
KRT39Q6A163 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
KRT39Q6A163 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
KRT39Q6A163 MIR3917-201ENST00000580971 93 ntBASIC19.89■□□□□ 0.77
KRT39Q6A163 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
KRT39Q6A163 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
KRT39Q6A163 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC19.89■□□□□ 0.77
KRT39Q6A163 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
KRT39Q6A163 AC092865.7-201ENST00000641832 219 ntBASIC19.89■□□□□ 0.77
KRT39Q6A163 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
KRT39Q6A163 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC19.89■□□□□ 0.77
KRT39Q6A163 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC19.89■□□□□ 0.77
KRT39Q6A163 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
KRT39Q6A163 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
KRT39Q6A163 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
KRT39Q6A163 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
KRT39Q6A163 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms