Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC40Q4G0X9 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC40Q4G0X9 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
CCDC40Q4G0X9 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
CCDC40Q4G0X9 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC20.32■□□□□ 0.84
CCDC40Q4G0X9 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
CCDC40Q4G0X9 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC20.32■□□□□ 0.84
CCDC40Q4G0X9 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC20.32■□□□□ 0.84
CCDC40Q4G0X9 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC40Q4G0X9 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC40Q4G0X9 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
CCDC40Q4G0X9 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC40Q4G0X9 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC40Q4G0X9 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC40Q4G0X9 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC40Q4G0X9 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC20.32■□□□□ 0.84
CCDC40Q4G0X9 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
CCDC40Q4G0X9 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC20.32■□□□□ 0.84
CCDC40Q4G0X9 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC40Q4G0X9 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC40Q4G0X9 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
CCDC40Q4G0X9 AP000525.1-201ENST00000608286 694 ntBASIC20.32■□□□□ 0.84
CCDC40Q4G0X9 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC20.32■□□□□ 0.84
CCDC40Q4G0X9 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC20.32■□□□□ 0.84
CCDC40Q4G0X9 AL162741.1-201ENST00000565563 1558 ntBASIC20.32■□□□□ 0.84
CCDC40Q4G0X9 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
CCDC40Q4G0X9 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC40Q4G0X9 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC40Q4G0X9 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC40Q4G0X9 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC40Q4G0X9 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC40Q4G0X9 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC20.32■□□□□ 0.84
CCDC40Q4G0X9 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC40Q4G0X9 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC40Q4G0X9 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC40Q4G0X9 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC40Q4G0X9 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC40Q4G0X9 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC40Q4G0X9 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC20.31■□□□□ 0.84
CCDC40Q4G0X9 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC20.31■□□□□ 0.84
CCDC40Q4G0X9 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC40Q4G0X9 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC20.31■□□□□ 0.84
CCDC40Q4G0X9 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC40Q4G0X9 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC40Q4G0X9 SNORA78-201ENST00000459373 127 ntBASIC20.31■□□□□ 0.84
CCDC40Q4G0X9 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC20.31■□□□□ 0.84
CCDC40Q4G0X9 KRT18P41-201ENST00000518924 1277 ntBASIC20.31■□□□□ 0.84
CCDC40Q4G0X9 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC20.31■□□□□ 0.84
CCDC40Q4G0X9 MIR4674-201ENST00000582457 87 ntBASIC20.31■□□□□ 0.84
CCDC40Q4G0X9 MIR3180-5-201ENST00000583743 153 ntBASIC20.31■□□□□ 0.84
CCDC40Q4G0X9 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC20.31■□□□□ 0.84
CCDC40Q4G0X9 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC20.31■□□□□ 0.84
CCDC40Q4G0X9 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC20.31■□□□□ 0.84
CCDC40Q4G0X9 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC40Q4G0X9 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC40Q4G0X9 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC40Q4G0X9 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC20.31■□□□□ 0.84
CCDC40Q4G0X9 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC40Q4G0X9 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC40Q4G0X9 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC40Q4G0X9 AC034236.2-201ENST00000606662 1610 ntBASIC20.31■□□□□ 0.84
CCDC40Q4G0X9 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC20.31■□□□□ 0.84
CCDC40Q4G0X9 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
CCDC40Q4G0X9 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC40Q4G0X9 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC40Q4G0X9 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC20.3■□□□□ 0.84
CCDC40Q4G0X9 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC40Q4G0X9 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC40Q4G0X9 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC40Q4G0X9 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC40Q4G0X9 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC40Q4G0X9 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
CCDC40Q4G0X9 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC40Q4G0X9 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC40Q4G0X9 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
CCDC40Q4G0X9 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC40Q4G0X9 HIST1H2APS4-201ENST00000362070 348 ntBASIC20.3■□□□□ 0.84
CCDC40Q4G0X9 AL390955.1-201ENST00000428694 934 ntBASIC20.3■□□□□ 0.84
CCDC40Q4G0X9 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
CCDC40Q4G0X9 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC20.3■□□□□ 0.84
CCDC40Q4G0X9 CFL2-205ENST00000555765 632 ntTSL 2 BASIC20.3■□□□□ 0.84
CCDC40Q4G0X9 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC40Q4G0X9 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC40Q4G0X9 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC40Q4G0X9 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC40Q4G0X9 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC40Q4G0X9 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC40Q4G0X9 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
CCDC40Q4G0X9 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC20.29■□□□□ 0.84
CCDC40Q4G0X9 AC036111.1-201ENST00000533973 1582 ntBASIC20.29■□□□□ 0.84
CCDC40Q4G0X9 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC20.29■□□□□ 0.84
CCDC40Q4G0X9 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
CCDC40Q4G0X9 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
CCDC40Q4G0X9 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC40Q4G0X9 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
CCDC40Q4G0X9 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC20.29■□□□□ 0.84
CCDC40Q4G0X9 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC20.29■□□□□ 0.84
CCDC40Q4G0X9 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC40Q4G0X9 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC20.29■□□□□ 0.84
CCDC40Q4G0X9 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms