Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PEX3P56589 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PEX3P56589 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
PEX3P56589 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC20.3■□□□□ 0.84
PEX3P56589 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC20.3■□□□□ 0.84
PEX3P56589 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC20.3■□□□□ 0.84
PEX3P56589 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PEX3P56589 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PEX3P56589 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PEX3P56589 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PEX3P56589 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PEX3P56589 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PEX3P56589 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
PEX3P56589 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC20.29■□□□□ 0.84
PEX3P56589 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC20.29■□□□□ 0.84
PEX3P56589 CLN6-204ENST00000564752 900 ntTSL 3 BASIC20.29■□□□□ 0.84
PEX3P56589 NT5C-211ENST00000582170 653 ntTSL 3 BASIC20.29■□□□□ 0.84
PEX3P56589 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
PEX3P56589 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
PEX3P56589 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
PEX3P56589 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PEX3P56589 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
PEX3P56589 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PEX3P56589 ADK-206ENST00000541550 2222 ntTSL 2 BASIC20.29■□□□□ 0.84
PEX3P56589 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
PEX3P56589 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
PEX3P56589 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
PEX3P56589 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PEX3P56589 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PEX3P56589 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PEX3P56589 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PEX3P56589 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PEX3P56589 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
PEX3P56589 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC20.28■□□□□ 0.84
PEX3P56589 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PEX3P56589 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC20.28■□□□□ 0.84
PEX3P56589 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC20.28■□□□□ 0.84
PEX3P56589 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
PEX3P56589 HLA-F-220ENST00000434407 884 ntBASIC20.28■□□□□ 0.84
PEX3P56589 SPDYE13P-201ENST00000445314 798 ntBASIC20.28■□□□□ 0.84
PEX3P56589 VENTXP5-201ENST00000523979 775 ntBASIC20.28■□□□□ 0.84
PEX3P56589 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
PEX3P56589 ZNF444P1-201ENST00000559497 298 ntBASIC20.28■□□□□ 0.84
PEX3P56589 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
PEX3P56589 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PEX3P56589 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
PEX3P56589 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.28■□□□□ 0.84
PEX3P56589 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PEX3P56589 AC020763.4-201ENST00000623414 4170 ntBASIC20.28■□□□□ 0.84
PEX3P56589 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC20.28■□□□□ 0.84
PEX3P56589 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PEX3P56589 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC20.28■□□□□ 0.84
PEX3P56589 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PEX3P56589 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
PEX3P56589 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
PEX3P56589 AC073592.3-201ENST00000625118 1834 ntBASIC20.27■□□□□ 0.84
PEX3P56589 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PEX3P56589 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PEX3P56589 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC20.27■□□□□ 0.84
PEX3P56589 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PEX3P56589 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC20.27■□□□□ 0.84
PEX3P56589 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PEX3P56589 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PEX3P56589 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PEX3P56589 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PEX3P56589 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC20.27■□□□□ 0.84
PEX3P56589 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC20.27■□□□□ 0.84
PEX3P56589 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC20.27■□□□□ 0.84
PEX3P56589 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC20.27■□□□□ 0.84
PEX3P56589 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC20.27■□□□□ 0.84
PEX3P56589 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.27■□□□□ 0.84
PEX3P56589 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PEX3P56589 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PEX3P56589 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PEX3P56589 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC20.27■□□□□ 0.84
PEX3P56589 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
PEX3P56589 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
PEX3P56589 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.83
PEX3P56589 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
PEX3P56589 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
PEX3P56589 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC20.27■□□□□ 0.83
PEX3P56589 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
PEX3P56589 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC20.26■□□□□ 0.83
PEX3P56589 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
PEX3P56589 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PEX3P56589 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PEX3P56589 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PEX3P56589 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PEX3P56589 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
PEX3P56589 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PEX3P56589 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PEX3P56589 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PEX3P56589 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
PEX3P56589 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC20.26■□□□□ 0.83
PEX3P56589 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PEX3P56589 CD320-202ENST00000537716 1119 ntTSL 2 BASIC20.26■□□□□ 0.83
PEX3P56589 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC20.26■□□□□ 0.83
PEX3P56589 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC20.26■□□□□ 0.83
PEX3P56589 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
PEX3P56589 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms