Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
PKNOX1P55347 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC18.12■□□□□ 0.49
PKNOX1P55347 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PKNOX1P55347 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC18.11■□□□□ 0.49
PKNOX1P55347 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
PKNOX1P55347 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PKNOX1P55347 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PKNOX1P55347 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PKNOX1P55347 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
PKNOX1P55347 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PKNOX1P55347 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC18.11■□□□□ 0.49
PKNOX1P55347 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PKNOX1P55347 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC18.11■□□□□ 0.49
PKNOX1P55347 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PKNOX1P55347 B3GAT3P1-201ENST00000471720 806 ntBASIC18.11■□□□□ 0.49
PKNOX1P55347 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC18.11■□□□□ 0.49
PKNOX1P55347 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
PKNOX1P55347 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC18.11■□□□□ 0.49
PKNOX1P55347 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC18.11■□□□□ 0.49
PKNOX1P55347 TK2-204ENST00000525974 1178 ntTSL 2 BASIC18.11■□□□□ 0.49
PKNOX1P55347 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC18.11■□□□□ 0.49
PKNOX1P55347 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC18.11■□□□□ 0.49
PKNOX1P55347 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC18.11■□□□□ 0.49
PKNOX1P55347 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PKNOX1P55347 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PKNOX1P55347 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC18.11■□□□□ 0.49
PKNOX1P55347 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
PKNOX1P55347 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PKNOX1P55347 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC18.11■□□□□ 0.49
PKNOX1P55347 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PKNOX1P55347 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC18.11■□□□□ 0.49
PKNOX1P55347 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PKNOX1P55347 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PKNOX1P55347 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
PKNOX1P55347 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PKNOX1P55347 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC18.1■□□□□ 0.49
PKNOX1P55347 GATB-213ENST00000515812 1893 ntTSL 5 BASIC18.1■□□□□ 0.49
PKNOX1P55347 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
PKNOX1P55347 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PKNOX1P55347 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PKNOX1P55347 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC18.1■□□□□ 0.49
PKNOX1P55347 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
PKNOX1P55347 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PKNOX1P55347 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PKNOX1P55347 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
PKNOX1P55347 FSCN1P1-201ENST00000568912 1481 ntBASIC18.1■□□□□ 0.49
PKNOX1P55347 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
PKNOX1P55347 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
PKNOX1P55347 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC18.1■□□□□ 0.49
PKNOX1P55347 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC18.1■□□□□ 0.49
PKNOX1P55347 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PKNOX1P55347 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC18.1■□□□□ 0.49
PKNOX1P55347 MIR4651-201ENST00000582622 73 ntBASIC18.1■□□□□ 0.49
PKNOX1P55347 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC18.1■□□□□ 0.49
PKNOX1P55347 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
PKNOX1P55347 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
PKNOX1P55347 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
PKNOX1P55347 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PKNOX1P55347 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC18.1■□□□□ 0.49
PKNOX1P55347 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PKNOX1P55347 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PKNOX1P55347 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PKNOX1P55347 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PKNOX1P55347 ESPNP-201ENST00000270691 2015 ntBASIC18.1■□□□□ 0.49
PKNOX1P55347 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PKNOX1P55347 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PKNOX1P55347 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC18.09■□□□□ 0.49
PKNOX1P55347 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PKNOX1P55347 AL109659.2-201ENST00000606809 1674 ntBASIC18.09■□□□□ 0.49
PKNOX1P55347 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
PKNOX1P55347 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PKNOX1P55347 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
PKNOX1P55347 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PKNOX1P55347 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC18.09■□□□□ 0.49
PKNOX1P55347 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC18.09■□□□□ 0.49
PKNOX1P55347 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
PKNOX1P55347 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC18.09■□□□□ 0.49
PKNOX1P55347 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
PKNOX1P55347 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
PKNOX1P55347 KRT18P41-201ENST00000518924 1277 ntBASIC18.09■□□□□ 0.49
PKNOX1P55347 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC18.09■□□□□ 0.49
PKNOX1P55347 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC18.09■□□□□ 0.49
PKNOX1P55347 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
PKNOX1P55347 AP000692.2-201ENST00000608391 879 ntBASIC18.09■□□□□ 0.49
PKNOX1P55347 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
PKNOX1P55347 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PKNOX1P55347 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PKNOX1P55347 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PKNOX1P55347 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PKNOX1P55347 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
PKNOX1P55347 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.09■□□□□ 0.49
PKNOX1P55347 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC18.09■□□□□ 0.49
PKNOX1P55347 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
PKNOX1P55347 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
PKNOX1P55347 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PKNOX1P55347 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC18.08■□□□□ 0.49
PKNOX1P55347 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
PKNOX1P55347 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.08■□□□□ 0.49
PKNOX1P55347 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.08■□□□□ 0.49
PKNOX1P55347 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC18.08■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms