Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHMT2P34897 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHMT2P34897 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHMT2P34897 LINC01238-205ENST00000567549 1107 ntBASIC18.07■□□□□ 0.48
SHMT2P34897 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC18.07■□□□□ 0.48
SHMT2P34897 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SHMT2P34897 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC18.07■□□□□ 0.48
SHMT2P34897 AC112497.1-201ENST00000624824 639 ntBASIC18.07■□□□□ 0.48
SHMT2P34897 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHMT2P34897 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHMT2P34897 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC18.07■□□□□ 0.48
SHMT2P34897 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHMT2P34897 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
SHMT2P34897 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.07■□□□□ 0.48
SHMT2P34897 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
SHMT2P34897 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SHMT2P34897 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHMT2P34897 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
SHMT2P34897 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHMT2P34897 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.07■□□□□ 0.48
SHMT2P34897 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
SHMT2P34897 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHMT2P34897 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHMT2P34897 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHMT2P34897 HOXB1-202ENST00000577092 1414 ntBASIC18.06■□□□□ 0.48
SHMT2P34897 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.06■□□□□ 0.48
SHMT2P34897 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SHMT2P34897 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.06■□□□□ 0.48
SHMT2P34897 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHMT2P34897 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHMT2P34897 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHMT2P34897 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHMT2P34897 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHMT2P34897 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHMT2P34897 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC18.06■□□□□ 0.48
SHMT2P34897 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.06■□□□□ 0.48
SHMT2P34897 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC18.06■□□□□ 0.48
SHMT2P34897 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHMT2P34897 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHMT2P34897 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHMT2P34897 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHMT2P34897 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHMT2P34897 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHMT2P34897 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
SHMT2P34897 TSPY5P-201ENST00000426936 936 ntBASIC18.06■□□□□ 0.48
SHMT2P34897 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC18.06■□□□□ 0.48
SHMT2P34897 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC18.06■□□□□ 0.48
SHMT2P34897 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC18.06■□□□□ 0.48
SHMT2P34897 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SHMT2P34897 LTBR-211ENST00000543190 785 ntTSL 3 BASIC18.06■□□□□ 0.48
SHMT2P34897 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC18.06■□□□□ 0.48
SHMT2P34897 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SHMT2P34897 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC18.06■□□□□ 0.48
SHMT2P34897 AC011558.1-201ENST00000623459 338 ntBASIC18.06■□□□□ 0.48
SHMT2P34897 MTMR9LP-203ENST00000426597 1545 ntBASIC18.06■□□□□ 0.48
SHMT2P34897 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SHMT2P34897 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.06■□□□□ 0.48
SHMT2P34897 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC18.06■□□□□ 0.48
SHMT2P34897 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHMT2P34897 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SHMT2P34897 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHMT2P34897 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.06■□□□□ 0.48
SHMT2P34897 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SHMT2P34897 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC18.06■□□□□ 0.48
SHMT2P34897 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHMT2P34897 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHMT2P34897 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.06■□□□□ 0.48
SHMT2P34897 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.06■□□□□ 0.48
SHMT2P34897 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
SHMT2P34897 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SHMT2P34897 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHMT2P34897 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHMT2P34897 AL357033.4-201ENST00000617703 1807 ntBASIC18.05■□□□□ 0.48
SHMT2P34897 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHMT2P34897 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18.05■□□□□ 0.48
SHMT2P34897 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHMT2P34897 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHMT2P34897 MIR1224-201ENST00000408193 85 ntBASIC18.05■□□□□ 0.48
SHMT2P34897 KRT18P23-201ENST00000435622 1283 ntBASIC18.05■□□□□ 0.48
SHMT2P34897 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SHMT2P34897 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SHMT2P34897 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC18.05■□□□□ 0.48
SHMT2P34897 HOMER2P1-201ENST00000455653 964 ntBASIC18.05■□□□□ 0.48
SHMT2P34897 AC092647.4-201ENST00000457211 535 ntBASIC18.05■□□□□ 0.48
SHMT2P34897 AC063952.2-201ENST00000498792 1227 ntBASIC18.05■□□□□ 0.48
SHMT2P34897 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC18.05■□□□□ 0.48
SHMT2P34897 AL441883.1-201ENST00000566170 1045 ntBASIC18.05■□□□□ 0.48
SHMT2P34897 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SHMT2P34897 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC18.05■□□□□ 0.48
SHMT2P34897 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.48
SHMT2P34897 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC18.05■□□□□ 0.48
SHMT2P34897 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
SHMT2P34897 AL590326.2-201ENST00000625139 305 ntBASIC18.05■□□□□ 0.48
SHMT2P34897 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
SHMT2P34897 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHMT2P34897 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC18.05■□□□□ 0.48
SHMT2P34897 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHMT2P34897 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SHMT2P34897 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHMT2P34897 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms