Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 UBQLN4P1-201ENST00000461599 1801 ntBASIC21.33■■□□□ 1.01
ERCC3P19447 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
ERCC3P19447 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC21.33■■□□□ 1
ERCC3P19447 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
ERCC3P19447 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC21.33■■□□□ 1
ERCC3P19447 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC21.32■■□□□ 1
ERCC3P19447 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
ERCC3P19447 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
ERCC3P19447 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
ERCC3P19447 AC006333.2-201ENST00000607957 2099 ntBASIC21.32■■□□□ 1
ERCC3P19447 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC21.32■■□□□ 1
ERCC3P19447 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC21.32■■□□□ 1
ERCC3P19447 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC21.32■■□□□ 1
ERCC3P19447 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC21.32■■□□□ 1
ERCC3P19447 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
ERCC3P19447 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
ERCC3P19447 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC21.32■■□□□ 1
ERCC3P19447 EMBP1-201ENST00000458200 901 ntBASIC21.32■■□□□ 1
ERCC3P19447 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC21.32■■□□□ 1
ERCC3P19447 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC21.32■■□□□ 1
ERCC3P19447 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC21.32■■□□□ 1
ERCC3P19447 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC21.32■■□□□ 1
ERCC3P19447 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
ERCC3P19447 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
ERCC3P19447 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
ERCC3P19447 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
ERCC3P19447 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
ERCC3P19447 AC034236.2-201ENST00000606662 1610 ntBASIC21.32■■□□□ 1
ERCC3P19447 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC21.32■■□□□ 1
ERCC3P19447 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
ERCC3P19447 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
ERCC3P19447 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
ERCC3P19447 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC21.31■■□□□ 1
ERCC3P19447 AC020763.4-201ENST00000623414 4170 ntBASIC21.31■■□□□ 1
ERCC3P19447 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
ERCC3P19447 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC21.31■■□□□ 1
ERCC3P19447 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
ERCC3P19447 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
ERCC3P19447 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC21.31■■□□□ 1
ERCC3P19447 FOSL1P1-201ENST00000511041 816 ntBASIC21.31■■□□□ 1
ERCC3P19447 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC21.31■■□□□ 1
ERCC3P19447 AC012615.1-201ENST00000565797 1299 ntBASIC21.31■■□□□ 1
ERCC3P19447 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC21.31■■□□□ 1
ERCC3P19447 AL390719.2-201ENST00000606993 987 ntBASIC21.31■■□□□ 1
ERCC3P19447 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
ERCC3P19447 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
ERCC3P19447 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC21.31■■□□□ 1
ERCC3P19447 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC21.31■■□□□ 1
ERCC3P19447 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
ERCC3P19447 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
ERCC3P19447 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC21.31■■□□□ 1
ERCC3P19447 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC21.31■■□□□ 1
ERCC3P19447 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
ERCC3P19447 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC21.31■■□□□ 1
ERCC3P19447 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC21.31■■□□□ 1
ERCC3P19447 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC21.3■■□□□ 1
ERCC3P19447 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
ERCC3P19447 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
ERCC3P19447 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
ERCC3P19447 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
ERCC3P19447 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC21.3■■□□□ 1
ERCC3P19447 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
ERCC3P19447 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC21.3■■□□□ 1
ERCC3P19447 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC21.3■■□□□ 1
ERCC3P19447 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC21.3■■□□□ 1
ERCC3P19447 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC21.3■■□□□ 1
ERCC3P19447 AC091304.2-201ENST00000564639 760 ntBASIC21.3■■□□□ 1
ERCC3P19447 AL121772.3-201ENST00000610840 674 ntBASIC21.3■■□□□ 1
ERCC3P19447 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC21.3■■□□□ 1
ERCC3P19447 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC21.3■■□□□ 1
ERCC3P19447 PBK-203ENST00000522944 1499 ntTSL 2 BASIC21.3■■□□□ 1
ERCC3P19447 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
ERCC3P19447 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
ERCC3P19447 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
ERCC3P19447 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
ERCC3P19447 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC21.3■■□□□ 1
ERCC3P19447 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
ERCC3P19447 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
ERCC3P19447 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
ERCC3P19447 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
ERCC3P19447 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC21.29■■□□□ 1
ERCC3P19447 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
ERCC3P19447 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC21.29■■□□□ 1
ERCC3P19447 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
ERCC3P19447 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC21.29■■□□□ 1
ERCC3P19447 AC090616.6-201ENST00000582640 721 ntBASIC21.29■■□□□ 1
ERCC3P19447 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC21.29■■□□□ 1
ERCC3P19447 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC21.29■■□□□ 1
ERCC3P19447 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC21.29■■□□□ 1
ERCC3P19447 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
ERCC3P19447 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC21.29■■□□□ 1
ERCC3P19447 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC21.29■■□□□ 1
ERCC3P19447 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
ERCC3P19447 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
ERCC3P19447 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
ERCC3P19447 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
ERCC3P19447 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
ERCC3P19447 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
ERCC3P19447 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
ERCC3P19447 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC21.28■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms