Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
TRAV40A0A0B4J280 RNF126P1-202ENST00000569893 925 ntBASIC15.03■□□□□ -0
TRAV40A0A0B4J280 AP002414.4-201ENST00000589764 1148 ntBASIC15.03■□□□□ -0
TRAV40A0A0B4J280 AL121894.2-201ENST00000602977 491 ntBASIC15.03■□□□□ -0
TRAV40A0A0B4J280 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
TRAV40A0A0B4J280 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
TRAV40A0A0B4J280 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
TRAV40A0A0B4J280 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
TRAV40A0A0B4J280 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC15.03■□□□□ -0
TRAV40A0A0B4J280 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
TRAV40A0A0B4J280 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC15.03■□□□□ -0
TRAV40A0A0B4J280 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
TRAV40A0A0B4J280 NFYC-AS1-201ENST00000606277 1687 ntBASIC15.03■□□□□ -0
TRAV40A0A0B4J280 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC15.03■□□□□ -0
TRAV40A0A0B4J280 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
TRAV40A0A0B4J280 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
TRAV40A0A0B4J280 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
TRAV40A0A0B4J280 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC15.02■□□□□ -0
TRAV40A0A0B4J280 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC15.02■□□□□ -0
TRAV40A0A0B4J280 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
TRAV40A0A0B4J280 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC15.02■□□□□ -0
TRAV40A0A0B4J280 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
TRAV40A0A0B4J280 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
TRAV40A0A0B4J280 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
TRAV40A0A0B4J280 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
TRAV40A0A0B4J280 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
TRAV40A0A0B4J280 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
TRAV40A0A0B4J280 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC15.02■□□□□ -0
TRAV40A0A0B4J280 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC15.02■□□□□ -0
TRAV40A0A0B4J280 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02■□□□□ -0
TRAV40A0A0B4J280 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC15.02■□□□□ -0
TRAV40A0A0B4J280 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC15.02■□□□□ -0
TRAV40A0A0B4J280 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC15.02■□□□□ -0
TRAV40A0A0B4J280 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC15.02■□□□□ -0
TRAV40A0A0B4J280 PRR29-207ENST00000580752 458 ntTSL 3 BASIC15.02■□□□□ -0
TRAV40A0A0B4J280 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC15.02■□□□□ -0
TRAV40A0A0B4J280 AC083906.6-201ENST00000641366 219 ntBASIC15.02■□□□□ -0
TRAV40A0A0B4J280 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
TRAV40A0A0B4J280 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
TRAV40A0A0B4J280 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
TRAV40A0A0B4J280 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
TRAV40A0A0B4J280 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC15.02□□□□□ -0.01
TRAV40A0A0B4J280 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
TRAV40A0A0B4J280 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
TRAV40A0A0B4J280 PTGES2-AS1-201ENST00000443493 2100 ntBASIC15.02□□□□□ -0.01
TRAV40A0A0B4J280 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
TRAV40A0A0B4J280 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
TRAV40A0A0B4J280 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
TRAV40A0A0B4J280 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
TRAV40A0A0B4J280 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
TRAV40A0A0B4J280 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
TRAV40A0A0B4J280 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
TRAV40A0A0B4J280 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC15.02□□□□□ -0.01
TRAV40A0A0B4J280 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
TRAV40A0A0B4J280 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC15.02□□□□□ -0.01
TRAV40A0A0B4J280 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 KRT8P50-201ENST00000562022 1438 ntBASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 KRT18P1-202ENST00000452408 1331 ntBASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 BAALC-202ENST00000306391 243 ntTSL 5 BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 BAALC-204ENST00000330955 222 ntTSL 5 BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 MIR3652-201ENST00000579335 131 ntBASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV40A0A0B4J280 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms