Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
DDX4Q9NQI0 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC21.77■■□□□ 1.08
DDX4Q9NQI0 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
DDX4Q9NQI0 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC21.77■■□□□ 1.08
DDX4Q9NQI0 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC21.77■■□□□ 1.08
DDX4Q9NQI0 AL160237.2-201ENST00000556165 472 ntBASIC21.77■■□□□ 1.08
DDX4Q9NQI0 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC21.77■■□□□ 1.08
DDX4Q9NQI0 ABR-217ENST00000572441 563 ntTSL 4 BASIC21.77■■□□□ 1.08
DDX4Q9NQI0 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
DDX4Q9NQI0 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
DDX4Q9NQI0 MYLKP1-201ENST00000509077 1580 ntBASIC21.77■■□□□ 1.08
DDX4Q9NQI0 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
DDX4Q9NQI0 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.07
DDX4Q9NQI0 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.07
DDX4Q9NQI0 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
DDX4Q9NQI0 ADK-206ENST00000541550 2222 ntTSL 2 BASIC21.76■■□□□ 1.07
DDX4Q9NQI0 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC21.76■■□□□ 1.07
DDX4Q9NQI0 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
DDX4Q9NQI0 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
DDX4Q9NQI0 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
DDX4Q9NQI0 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
DDX4Q9NQI0 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
DDX4Q9NQI0 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
DDX4Q9NQI0 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
DDX4Q9NQI0 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC21.76■■□□□ 1.07
DDX4Q9NQI0 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC21.76■■□□□ 1.07
DDX4Q9NQI0 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
DDX4Q9NQI0 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
DDX4Q9NQI0 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC21.76■■□□□ 1.07
DDX4Q9NQI0 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
DDX4Q9NQI0 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
DDX4Q9NQI0 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
DDX4Q9NQI0 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
DDX4Q9NQI0 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
DDX4Q9NQI0 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
DDX4Q9NQI0 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC21.75■■□□□ 1.07
DDX4Q9NQI0 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
DDX4Q9NQI0 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
DDX4Q9NQI0 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
DDX4Q9NQI0 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
DDX4Q9NQI0 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
DDX4Q9NQI0 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
DDX4Q9NQI0 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC21.75■■□□□ 1.07
DDX4Q9NQI0 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC21.75■■□□□ 1.07
DDX4Q9NQI0 AP002469.2-201ENST00000531724 424 ntBASIC21.75■■□□□ 1.07
DDX4Q9NQI0 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
DDX4Q9NQI0 TPM1-218ENST00000559281 851 ntTSL 5 BASIC21.75■■□□□ 1.07
DDX4Q9NQI0 IGHV3OR16-7-201ENST00000604106 360 ntBASIC21.75■■□□□ 1.07
DDX4Q9NQI0 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
DDX4Q9NQI0 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
DDX4Q9NQI0 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
DDX4Q9NQI0 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
DDX4Q9NQI0 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
DDX4Q9NQI0 COBL-210ENST00000632460 1941 ntTSL 5 BASIC21.74■■□□□ 1.07
DDX4Q9NQI0 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
DDX4Q9NQI0 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
DDX4Q9NQI0 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
DDX4Q9NQI0 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
DDX4Q9NQI0 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
DDX4Q9NQI0 NUS1P2-201ENST00000417358 873 ntBASIC21.74■■□□□ 1.07
DDX4Q9NQI0 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC21.74■■□□□ 1.07
DDX4Q9NQI0 BNIP3P18-201ENST00000593976 575 ntBASIC21.74■■□□□ 1.07
DDX4Q9NQI0 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
DDX4Q9NQI0 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC21.74■■□□□ 1.07
DDX4Q9NQI0 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC21.74■■□□□ 1.07
DDX4Q9NQI0 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC21.74■■□□□ 1.07
DDX4Q9NQI0 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
DDX4Q9NQI0 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC21.74■■□□□ 1.07
DDX4Q9NQI0 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
DDX4Q9NQI0 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
DDX4Q9NQI0 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
DDX4Q9NQI0 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
DDX4Q9NQI0 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
DDX4Q9NQI0 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
DDX4Q9NQI0 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC21.74■■□□□ 1.07
DDX4Q9NQI0 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC21.73■■□□□ 1.07
DDX4Q9NQI0 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
DDX4Q9NQI0 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC21.73■■□□□ 1.07
DDX4Q9NQI0 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
DDX4Q9NQI0 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
DDX4Q9NQI0 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
DDX4Q9NQI0 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
DDX4Q9NQI0 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
DDX4Q9NQI0 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
DDX4Q9NQI0 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
DDX4Q9NQI0 LSM5-204ENST00000409909 740 ntTSL 2 BASIC21.73■■□□□ 1.07
DDX4Q9NQI0 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC21.73■■□□□ 1.07
DDX4Q9NQI0 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC21.73■■□□□ 1.07
DDX4Q9NQI0 AC113404.2-201ENST00000507884 177 ntBASIC21.73■■□□□ 1.07
DDX4Q9NQI0 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC21.73■■□□□ 1.07
DDX4Q9NQI0 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
DDX4Q9NQI0 AC011840.4-201ENST00000578471 627 ntBASIC21.73■■□□□ 1.07
DDX4Q9NQI0 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
DDX4Q9NQI0 SLC25A6P4-201ENST00000586535 553 ntBASIC21.73■■□□□ 1.07
DDX4Q9NQI0 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
DDX4Q9NQI0 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
DDX4Q9NQI0 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
DDX4Q9NQI0 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
DDX4Q9NQI0 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
DDX4Q9NQI0 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms