Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC19.53■□□□□ 0.72
CHD9Q3L8U1 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CHD9Q3L8U1 PRR29-209ENST00000582540 967 ntTSL 2 BASIC19.53■□□□□ 0.72
CHD9Q3L8U1 ANKRD20A8P-203ENST00000641373 517 ntBASIC19.53■□□□□ 0.72
CHD9Q3L8U1 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHD9Q3L8U1 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC19.53■□□□□ 0.72
CHD9Q3L8U1 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC19.53■□□□□ 0.72
CHD9Q3L8U1 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC19.52■□□□□ 0.72
CHD9Q3L8U1 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC19.52■□□□□ 0.72
CHD9Q3L8U1 AP002414.3-201ENST00000589352 1468 ntBASIC19.52■□□□□ 0.72
CHD9Q3L8U1 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CHD9Q3L8U1 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CHD9Q3L8U1 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CHD9Q3L8U1 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC19.52■□□□□ 0.72
CHD9Q3L8U1 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CHD9Q3L8U1 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC19.52■□□□□ 0.72
CHD9Q3L8U1 KRT18P27-201ENST00000427733 1299 ntBASIC19.52■□□□□ 0.72
CHD9Q3L8U1 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC19.52■□□□□ 0.72
CHD9Q3L8U1 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CHD9Q3L8U1 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC19.52■□□□□ 0.72
CHD9Q3L8U1 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
CHD9Q3L8U1 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC19.52■□□□□ 0.72
CHD9Q3L8U1 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.52■□□□□ 0.72
CHD9Q3L8U1 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
CHD9Q3L8U1 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC19.52■□□□□ 0.72
CHD9Q3L8U1 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CHD9Q3L8U1 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
CHD9Q3L8U1 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC19.52■□□□□ 0.71
CHD9Q3L8U1 AC113404.2-201ENST00000507884 177 ntBASIC19.52■□□□□ 0.71
CHD9Q3L8U1 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC19.52■□□□□ 0.71
CHD9Q3L8U1 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC19.52■□□□□ 0.71
CHD9Q3L8U1 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.71
CHD9Q3L8U1 COPE-211ENST00000600932 1144 ntTSL 5 BASIC19.52■□□□□ 0.71
CHD9Q3L8U1 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
CHD9Q3L8U1 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC19.52■□□□□ 0.71
CHD9Q3L8U1 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
CHD9Q3L8U1 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHD9Q3L8U1 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHD9Q3L8U1 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CHD9Q3L8U1 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
CHD9Q3L8U1 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CHD9Q3L8U1 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC19.51■□□□□ 0.71
CHD9Q3L8U1 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC19.51■□□□□ 0.71
CHD9Q3L8U1 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC19.51■□□□□ 0.71
CHD9Q3L8U1 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
CHD9Q3L8U1 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CHD9Q3L8U1 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.51■□□□□ 0.71
CHD9Q3L8U1 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
CHD9Q3L8U1 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHD9Q3L8U1 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
CHD9Q3L8U1 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC19.51■□□□□ 0.71
CHD9Q3L8U1 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHD9Q3L8U1 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CHD9Q3L8U1 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC19.51■□□□□ 0.71
CHD9Q3L8U1 LHX6-205ENST00000464484 666 ntTSL 2 BASIC19.51■□□□□ 0.71
CHD9Q3L8U1 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC19.51■□□□□ 0.71
CHD9Q3L8U1 AC092910.1-201ENST00000482027 1129 ntBASIC19.51■□□□□ 0.71
CHD9Q3L8U1 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CHD9Q3L8U1 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHD9Q3L8U1 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHD9Q3L8U1 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHD9Q3L8U1 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.51■□□□□ 0.71
CHD9Q3L8U1 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CHD9Q3L8U1 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC19.5■□□□□ 0.71
CHD9Q3L8U1 FUOM-202ENST00000368551 628 ntTSL 3 BASIC19.5■□□□□ 0.71
CHD9Q3L8U1 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
CHD9Q3L8U1 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CHD9Q3L8U1 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
CHD9Q3L8U1 CRCP-205ENST00000431089 942 ntTSL 2 BASIC19.5■□□□□ 0.71
CHD9Q3L8U1 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC19.5■□□□□ 0.71
CHD9Q3L8U1 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CHD9Q3L8U1 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CHD9Q3L8U1 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CHD9Q3L8U1 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CHD9Q3L8U1 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC19.5■□□□□ 0.71
CHD9Q3L8U1 AC009947.1-201ENST00000444350 727 ntBASIC19.5■□□□□ 0.71
CHD9Q3L8U1 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC19.5■□□□□ 0.71
CHD9Q3L8U1 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CHD9Q3L8U1 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC19.5■□□□□ 0.71
CHD9Q3L8U1 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
CHD9Q3L8U1 Z98044.1-201ENST00000632503 1764 ntBASIC19.5■□□□□ 0.71
CHD9Q3L8U1 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
CHD9Q3L8U1 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CHD9Q3L8U1 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC19.5■□□□□ 0.71
CHD9Q3L8U1 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CHD9Q3L8U1 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CHD9Q3L8U1 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CHD9Q3L8U1 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC19.5■□□□□ 0.71
CHD9Q3L8U1 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC19.5■□□□□ 0.71
CHD9Q3L8U1 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC19.5■□□□□ 0.71
CHD9Q3L8U1 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC19.5■□□□□ 0.71
CHD9Q3L8U1 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CHD9Q3L8U1 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CHD9Q3L8U1 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC19.49■□□□□ 0.71
CHD9Q3L8U1 GABARAPL3-202ENST00000624044 1851 ntBASIC19.49■□□□□ 0.71
CHD9Q3L8U1 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
CHD9Q3L8U1 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
CHD9Q3L8U1 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHD9Q3L8U1 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHD9Q3L8U1 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms