Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMARCA1P28370 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
SMARCA1P28370 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMARCA1P28370 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SMARCA1P28370 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
SMARCA1P28370 GMCL1P1-201ENST00000463439 1581 ntBASIC21.16■□□□□ 0.98
SMARCA1P28370 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
SMARCA1P28370 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMARCA1P28370 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC21.16■□□□□ 0.98
SMARCA1P28370 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMARCA1P28370 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC21.16■□□□□ 0.98
SMARCA1P28370 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SMARCA1P28370 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC21.16■□□□□ 0.98
SMARCA1P28370 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC21.16■□□□□ 0.98
SMARCA1P28370 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC21.16■□□□□ 0.98
SMARCA1P28370 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMARCA1P28370 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC21.16■□□□□ 0.98
SMARCA1P28370 GXYLT1P4-201ENST00000613576 1192 ntBASIC21.16■□□□□ 0.98
SMARCA1P28370 AL358472.4-201ENST00000633140 710 ntBASIC21.16■□□□□ 0.98
SMARCA1P28370 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMARCA1P28370 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC21.16■□□□□ 0.98
SMARCA1P28370 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
SMARCA1P28370 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SMARCA1P28370 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC21.16■□□□□ 0.98
SMARCA1P28370 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC21.16■□□□□ 0.98
SMARCA1P28370 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
SMARCA1P28370 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMARCA1P28370 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC21.15■□□□□ 0.98
SMARCA1P28370 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC21.15■□□□□ 0.98
SMARCA1P28370 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
SMARCA1P28370 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SMARCA1P28370 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SMARCA1P28370 LINC01126-201ENST00000623515 1646 ntBASIC21.15■□□□□ 0.98
SMARCA1P28370 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
SMARCA1P28370 USP49-202ENST00000373010 2446 ntTSL 5 BASIC21.15■□□□□ 0.98
SMARCA1P28370 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
SMARCA1P28370 IER3-202ENST00000376377 1350 ntBASIC21.15■□□□□ 0.98
SMARCA1P28370 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
SMARCA1P28370 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SMARCA1P28370 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SMARCA1P28370 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SMARCA1P28370 FXN-203ENST00000396366 922 ntTSL 2 BASIC21.15■□□□□ 0.98
SMARCA1P28370 COPS8-203ENST00000409334 794 ntTSL 5 BASIC21.15■□□□□ 0.98
SMARCA1P28370 AP003733.1-201ENST00000491725 852 ntBASIC21.15■□□□□ 0.98
SMARCA1P28370 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC21.15■□□□□ 0.98
SMARCA1P28370 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC21.15■□□□□ 0.98
SMARCA1P28370 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC21.15■□□□□ 0.98
SMARCA1P28370 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC21.15■□□□□ 0.98
SMARCA1P28370 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
SMARCA1P28370 RNF165-205ENST00000588679 2904 ntBASIC21.15■□□□□ 0.98
SMARCA1P28370 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC21.15■□□□□ 0.98
SMARCA1P28370 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC21.15■□□□□ 0.98
SMARCA1P28370 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC21.15■□□□□ 0.98
SMARCA1P28370 STX6-204ENST00000542060 4809 ntTSL 2 BASIC21.15■□□□□ 0.98
SMARCA1P28370 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SMARCA1P28370 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SMARCA1P28370 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SMARCA1P28370 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
SMARCA1P28370 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SMARCA1P28370 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
SMARCA1P28370 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SMARCA1P28370 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
SMARCA1P28370 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC21.14■□□□□ 0.98
SMARCA1P28370 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
SMARCA1P28370 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SMARCA1P28370 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SMARCA1P28370 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SMARCA1P28370 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SMARCA1P28370 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
SMARCA1P28370 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC21.14■□□□□ 0.97
SMARCA1P28370 IGHGP-201ENST00000390555 1178 ntBASIC21.14■□□□□ 0.97
SMARCA1P28370 KIRREL3-AS3-201ENST00000404882 831 ntBASIC21.14■□□□□ 0.97
SMARCA1P28370 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SMARCA1P28370 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC21.14■□□□□ 0.97
SMARCA1P28370 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC21.14■□□□□ 0.97
SMARCA1P28370 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC21.14■□□□□ 0.97
SMARCA1P28370 AC011498.5-201ENST00000592027 486 ntBASIC21.14■□□□□ 0.97
SMARCA1P28370 NDUFV2-AS1-203ENST00000608008 779 ntBASIC21.14■□□□□ 0.97
SMARCA1P28370 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
SMARCA1P28370 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC21.14■□□□□ 0.97
SMARCA1P28370 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC21.14■□□□□ 0.97
SMARCA1P28370 ADK-206ENST00000541550 2222 ntTSL 2 BASIC21.14■□□□□ 0.97
SMARCA1P28370 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SMARCA1P28370 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC21.14■□□□□ 0.97
SMARCA1P28370 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SMARCA1P28370 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SMARCA1P28370 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC21.14■□□□□ 0.97
SMARCA1P28370 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SMARCA1P28370 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SMARCA1P28370 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
SMARCA1P28370 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC21.14■□□□□ 0.97
SMARCA1P28370 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SMARCA1P28370 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
SMARCA1P28370 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SMARCA1P28370 AC005082.1-201ENST00000413042 2259 ntBASIC21.13■□□□□ 0.97
SMARCA1P28370 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SMARCA1P28370 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
SMARCA1P28370 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SMARCA1P28370 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC21.13■□□□□ 0.97
SMARCA1P28370 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms