Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
AP4E1Q9UPM8 AC112497.1-201ENST00000624824 639 ntBASIC19.21■□□□□ 0.67
AP4E1Q9UPM8 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
AP4E1Q9UPM8 ADK-206ENST00000541550 2222 ntTSL 2 BASIC19.21■□□□□ 0.67
AP4E1Q9UPM8 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC19.21■□□□□ 0.67
AP4E1Q9UPM8 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
AP4E1Q9UPM8 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC19.21■□□□□ 0.67
AP4E1Q9UPM8 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
AP4E1Q9UPM8 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
AP4E1Q9UPM8 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
AP4E1Q9UPM8 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
AP4E1Q9UPM8 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC19.21■□□□□ 0.67
AP4E1Q9UPM8 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
AP4E1Q9UPM8 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
AP4E1Q9UPM8 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
AP4E1Q9UPM8 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
AP4E1Q9UPM8 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
AP4E1Q9UPM8 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
AP4E1Q9UPM8 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
AP4E1Q9UPM8 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
AP4E1Q9UPM8 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
AP4E1Q9UPM8 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC19.2■□□□□ 0.66
AP4E1Q9UPM8 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC19.2■□□□□ 0.66
AP4E1Q9UPM8 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
AP4E1Q9UPM8 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
AP4E1Q9UPM8 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
AP4E1Q9UPM8 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC19.2■□□□□ 0.66
AP4E1Q9UPM8 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
AP4E1Q9UPM8 SLC25A3P1-201ENST00000443844 931 ntBASIC19.2■□□□□ 0.66
AP4E1Q9UPM8 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC19.2■□□□□ 0.66
AP4E1Q9UPM8 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC19.2■□□□□ 0.66
AP4E1Q9UPM8 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC19.2■□□□□ 0.66
AP4E1Q9UPM8 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC19.2■□□□□ 0.66
AP4E1Q9UPM8 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
AP4E1Q9UPM8 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC19.2■□□□□ 0.66
AP4E1Q9UPM8 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
AP4E1Q9UPM8 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
AP4E1Q9UPM8 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
AP4E1Q9UPM8 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
AP4E1Q9UPM8 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC19.19■□□□□ 0.66
AP4E1Q9UPM8 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC19.19■□□□□ 0.66
AP4E1Q9UPM8 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
AP4E1Q9UPM8 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC19.19■□□□□ 0.66
AP4E1Q9UPM8 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
AP4E1Q9UPM8 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
AP4E1Q9UPM8 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
AP4E1Q9UPM8 ECEL1P3-201ENST00000427961 737 ntBASIC19.19■□□□□ 0.66
AP4E1Q9UPM8 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
AP4E1Q9UPM8 AC012306.2-201ENST00000609350 630 ntBASIC19.19■□□□□ 0.66
AP4E1Q9UPM8 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
AP4E1Q9UPM8 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
AP4E1Q9UPM8 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC19.19■□□□□ 0.66
AP4E1Q9UPM8 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
AP4E1Q9UPM8 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
AP4E1Q9UPM8 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
AP4E1Q9UPM8 COMP-202ENST00000425807 2292 ntTSL 2 BASIC19.19■□□□□ 0.66
AP4E1Q9UPM8 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
AP4E1Q9UPM8 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
AP4E1Q9UPM8 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
AP4E1Q9UPM8 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
AP4E1Q9UPM8 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
AP4E1Q9UPM8 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
AP4E1Q9UPM8 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC19.19■□□□□ 0.66
AP4E1Q9UPM8 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
AP4E1Q9UPM8 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
AP4E1Q9UPM8 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
AP4E1Q9UPM8 MADD-208ENST00000405573 1823 ntTSL 5 BASIC19.18■□□□□ 0.66
AP4E1Q9UPM8 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC19.18■□□□□ 0.66
AP4E1Q9UPM8 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
AP4E1Q9UPM8 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
AP4E1Q9UPM8 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
AP4E1Q9UPM8 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
AP4E1Q9UPM8 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
AP4E1Q9UPM8 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC19.18■□□□□ 0.66
AP4E1Q9UPM8 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC19.18■□□□□ 0.66
AP4E1Q9UPM8 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
AP4E1Q9UPM8 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
AP4E1Q9UPM8 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
AP4E1Q9UPM8 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
AP4E1Q9UPM8 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC19.18■□□□□ 0.66
AP4E1Q9UPM8 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
AP4E1Q9UPM8 Telomerase-vert.1-201ENST00000363312 438 ntBASIC19.18■□□□□ 0.66
AP4E1Q9UPM8 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
AP4E1Q9UPM8 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
AP4E1Q9UPM8 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC19.18■□□□□ 0.66
AP4E1Q9UPM8 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC19.18■□□□□ 0.66
AP4E1Q9UPM8 AC097493.4-201ENST00000641197 219 ntBASIC19.18■□□□□ 0.66
AP4E1Q9UPM8 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC19.18■□□□□ 0.66
AP4E1Q9UPM8 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
AP4E1Q9UPM8 AC099343.3-201ENST00000605834 2503 ntBASIC19.18■□□□□ 0.66
AP4E1Q9UPM8 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
AP4E1Q9UPM8 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
AP4E1Q9UPM8 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC19.18■□□□□ 0.66
AP4E1Q9UPM8 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
AP4E1Q9UPM8 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
AP4E1Q9UPM8 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC19.17■□□□□ 0.66
AP4E1Q9UPM8 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
AP4E1Q9UPM8 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC19.17■□□□□ 0.66
AP4E1Q9UPM8 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
AP4E1Q9UPM8 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms