Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMARCAL1Q9NZC9 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC19.51■□□□□ 0.71
SMARCAL1Q9NZC9 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC19.51■□□□□ 0.71
SMARCAL1Q9NZC9 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMARCAL1Q9NZC9 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC19.51■□□□□ 0.71
SMARCAL1Q9NZC9 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC19.51■□□□□ 0.71
SMARCAL1Q9NZC9 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
SMARCAL1Q9NZC9 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
SMARCAL1Q9NZC9 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC19.51■□□□□ 0.71
SMARCAL1Q9NZC9 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMARCAL1Q9NZC9 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC19.51■□□□□ 0.71
SMARCAL1Q9NZC9 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMARCAL1Q9NZC9 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMARCAL1Q9NZC9 AC009053.2-201ENST00000563701 2365 ntBASIC19.5■□□□□ 0.71
SMARCAL1Q9NZC9 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC19.5■□□□□ 0.71
SMARCAL1Q9NZC9 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMARCAL1Q9NZC9 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC19.5■□□□□ 0.71
SMARCAL1Q9NZC9 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
SMARCAL1Q9NZC9 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMARCAL1Q9NZC9 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMARCAL1Q9NZC9 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC19.5■□□□□ 0.71
SMARCAL1Q9NZC9 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SMARCAL1Q9NZC9 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC19.5■□□□□ 0.71
SMARCAL1Q9NZC9 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC19.5■□□□□ 0.71
SMARCAL1Q9NZC9 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC19.5■□□□□ 0.71
SMARCAL1Q9NZC9 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC19.5■□□□□ 0.71
SMARCAL1Q9NZC9 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC19.5■□□□□ 0.71
SMARCAL1Q9NZC9 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMARCAL1Q9NZC9 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
SMARCAL1Q9NZC9 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SMARCAL1Q9NZC9 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC19.5■□□□□ 0.71
SMARCAL1Q9NZC9 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
SMARCAL1Q9NZC9 KRT8P45-201ENST00000414328 1447 ntBASIC19.5■□□□□ 0.71
SMARCAL1Q9NZC9 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC19.5■□□□□ 0.71
SMARCAL1Q9NZC9 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC19.5■□□□□ 0.71
SMARCAL1Q9NZC9 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMARCAL1Q9NZC9 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC19.49■□□□□ 0.71
SMARCAL1Q9NZC9 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SMARCAL1Q9NZC9 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC19.49■□□□□ 0.71
SMARCAL1Q9NZC9 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
SMARCAL1Q9NZC9 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC19.49■□□□□ 0.71
SMARCAL1Q9NZC9 CEP83-AS1-201ENST00000623122 2482 ntBASIC19.49■□□□□ 0.71
SMARCAL1Q9NZC9 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMARCAL1Q9NZC9 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC19.49■□□□□ 0.71
SMARCAL1Q9NZC9 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC19.49■□□□□ 0.71
SMARCAL1Q9NZC9 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC19.49■□□□□ 0.71
SMARCAL1Q9NZC9 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SMARCAL1Q9NZC9 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMARCAL1Q9NZC9 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC19.49■□□□□ 0.71
SMARCAL1Q9NZC9 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMARCAL1Q9NZC9 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC19.49■□□□□ 0.71
SMARCAL1Q9NZC9 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
SMARCAL1Q9NZC9 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SMARCAL1Q9NZC9 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC19.49■□□□□ 0.71
SMARCAL1Q9NZC9 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC19.49■□□□□ 0.71
SMARCAL1Q9NZC9 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SMARCAL1Q9NZC9 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SMARCAL1Q9NZC9 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC19.49■□□□□ 0.71
SMARCAL1Q9NZC9 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMARCAL1Q9NZC9 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
SMARCAL1Q9NZC9 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC19.48■□□□□ 0.71
SMARCAL1Q9NZC9 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMARCAL1Q9NZC9 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMARCAL1Q9NZC9 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SMARCAL1Q9NZC9 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SMARCAL1Q9NZC9 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC19.48■□□□□ 0.71
SMARCAL1Q9NZC9 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
SMARCAL1Q9NZC9 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
SMARCAL1Q9NZC9 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SMARCAL1Q9NZC9 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMARCAL1Q9NZC9 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC19.48■□□□□ 0.71
SMARCAL1Q9NZC9 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SMARCAL1Q9NZC9 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMARCAL1Q9NZC9 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC19.48■□□□□ 0.71
SMARCAL1Q9NZC9 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SMARCAL1Q9NZC9 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC19.48■□□□□ 0.71
SMARCAL1Q9NZC9 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SMARCAL1Q9NZC9 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SMARCAL1Q9NZC9 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SMARCAL1Q9NZC9 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC19.48■□□□□ 0.71
SMARCAL1Q9NZC9 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC19.48■□□□□ 0.71
SMARCAL1Q9NZC9 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC19.48■□□□□ 0.71
SMARCAL1Q9NZC9 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC19.48■□□□□ 0.71
SMARCAL1Q9NZC9 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC19.48■□□□□ 0.71
SMARCAL1Q9NZC9 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMARCAL1Q9NZC9 AC112777.1-201ENST00000540175 1423 ntBASIC19.48■□□□□ 0.71
SMARCAL1Q9NZC9 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMARCAL1Q9NZC9 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMARCAL1Q9NZC9 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC19.48■□□□□ 0.71
SMARCAL1Q9NZC9 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC19.48■□□□□ 0.71
SMARCAL1Q9NZC9 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMARCAL1Q9NZC9 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SMARCAL1Q9NZC9 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC19.47■□□□□ 0.71
SMARCAL1Q9NZC9 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC19.47■□□□□ 0.71
SMARCAL1Q9NZC9 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMARCAL1Q9NZC9 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC19.47■□□□□ 0.71
SMARCAL1Q9NZC9 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC19.47■□□□□ 0.71
SMARCAL1Q9NZC9 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC19.47■□□□□ 0.71
SMARCAL1Q9NZC9 PP12613-201ENST00000424958 2230 ntBASIC19.47■□□□□ 0.71
SMARCAL1Q9NZC9 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms